Wall clock time and date at job start Mon Mar 30 2020 02:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00011 * 2 1 4 4 H 1.48504 * 109.47206 * 264.56838 * 3 2 1 5 5 H 1.48500 * 109.47109 * 24.56646 * 3 2 1 6 6 H 1.48494 * 109.47379 * 144.56746 * 3 2 1 7 7 C 1.37875 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00311 * 0.03213 * 7 2 1 9 9 C 1.50698 * 120.00156 * 180.02562 * 7 2 1 10 10 O 1.42894 * 110.25335 * 57.12209 * 9 7 2 11 11 C 1.54572 * 110.28573 * 179.15200 * 9 7 2 12 12 C 1.54998 * 102.95364 * 140.34002 * 11 9 7 13 13 N 1.48262 * 103.02259 * 322.33888 * 12 11 9 14 14 C 1.47251 * 110.66202 * 155.70688 * 13 12 11 15 15 C 1.53760 * 106.54891 * 274.96531 * 14 13 12 16 16 C 1.53873 * 105.65457 * 341.85829 * 15 14 13 17 17 C 1.48435 * 105.71936 * 40.30771 * 13 12 11 18 18 H 1.09001 * 111.60299 * 211.16071 * 17 13 12 19 19 H 0.97001 * 120.00014 * 359.97438 * 1 2 3 20 20 H 0.96701 * 113.99884 * 60.57495 * 10 9 7 21 21 H 1.09001 * 110.71448 * 258.70622 * 11 9 7 22 22 H 1.09003 * 110.71259 * 21.79523 * 11 9 7 23 23 H 1.09002 * 110.70880 * 80.72893 * 12 11 9 24 24 H 1.09009 * 110.70126 * 203.78233 * 12 11 9 25 25 H 1.08999 * 110.04009 * 34.23982 * 14 13 12 26 26 H 1.08998 * 110.03922 * 155.64431 * 14 13 12 27 27 H 1.08998 * 110.20979 * 100.90680 * 15 14 13 28 28 H 1.09004 * 110.20626 * 222.73284 * 15 14 13 29 29 H 1.08995 * 110.16427 * 119.52197 * 16 15 14 30 30 H 1.09000 * 110.16255 * 241.23491 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6114 1.9802 -1.3938 5 1 1.3939 2.6831 0.5821 6 1 3.4846 1.4761 0.8116 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0015 9 6 3.5115 -1.1940 0.0000 10 8 4.0058 -0.4670 1.1266 11 6 4.0475 -2.6437 0.0207 12 6 5.2590 -2.5800 -0.9439 13 7 4.7909 -1.6599 -2.0080 14 6 5.9336 -1.0240 -2.6848 15 6 6.3152 0.2031 -1.8406 16 6 5.0915 0.4941 -0.9543 17 6 4.0486 -0.5812 -1.3090 18 1 3.2421 -0.1843 -1.9256 19 1 -0.4850 0.8401 0.0004 20 1 3.7344 -0.8319 1.9800 21 1 4.3680 -2.9220 1.0247 22 1 3.2933 -3.3388 -0.3483 23 1 6.1335 -2.1710 -0.4378 24 1 5.4784 -3.5665 -1.3526 25 1 6.7721 -1.7187 -2.7344 26 1 5.6468 -0.7128 -3.6893 27 1 7.1838 -0.0211 -1.2215 28 1 6.5242 1.0550 -2.4876 29 1 5.3640 0.4204 0.0985 30 1 4.6978 1.4870 -1.1715 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123427839.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:49 Heat of formation + Delta-G solvation = -54.834948 kcal Electronic energy + Delta-G solvation = -13671.971083 eV Core-core repulsion = 11466.410771 eV Total energy + Delta-G solvation = -2205.560312 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.29962 -37.25929 -34.47903 -33.88020 -31.31302 -29.04075 -28.23788 -24.93133 -21.92308 -21.76492 -20.77588 -19.14170 -17.42329 -16.82360 -16.56049 -16.07572 -15.36240 -14.88276 -14.62333 -14.36618 -13.75555 -13.59295 -13.06848 -12.91850 -12.45236 -12.26119 -12.17999 -12.04029 -11.80171 -11.66336 -11.14905 -10.81167 -10.77142 -10.02143 -9.42000 -8.34733 -6.46986 1.35844 1.41661 1.68110 2.40304 3.00486 3.17858 3.56534 3.77089 4.06434 4.17663 4.22788 4.30986 4.41229 4.54837 4.65694 4.72512 4.95365 5.01685 5.02096 5.04470 5.21955 5.34199 5.41105 5.49603 5.68962 6.00167 6.11384 6.20465 6.63369 7.18432 7.36073 8.79246 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.041495 B = 0.018109 C = 0.015309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.613031 B = 1545.786384 C = 1828.513533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.029 3.971 3 Si 0.928 3.072 4 H -0.285 1.285 5 H -0.314 1.314 6 H -0.186 1.186 7 C -0.544 4.544 8 H 0.033 0.967 9 C 0.213 3.787 10 O -0.568 6.568 11 C -0.135 4.135 12 C 0.041 3.959 13 N -0.518 5.518 14 C 0.031 3.969 15 C -0.142 4.142 16 C -0.157 4.157 17 C 0.069 3.931 18 H 0.058 0.942 19 H 0.264 0.736 20 H 0.372 0.628 21 H 0.082 0.918 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.560 -0.665 -1.266 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.170 4.170 3 Si 0.754 3.246 4 H -0.212 1.212 5 H -0.243 1.243 6 H -0.107 1.107 7 C -0.582 4.582 8 H 0.051 0.949 9 C 0.173 3.827 10 O -0.377 6.377 11 C -0.173 4.173 12 C -0.087 4.087 13 N -0.241 5.241 14 C -0.097 4.097 15 C -0.181 4.181 16 C -0.196 4.196 17 C -0.040 4.040 18 H 0.077 0.923 19 H 0.073 0.927 20 H 0.221 0.779 21 H 0.101 0.899 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.365 -0.554 -2.146 14.535 hybrid contribution -0.603 0.854 0.824 1.331 sum 13.762 0.300 -1.322 13.829 Atomic orbital electron populations 1.70089 1.08550 1.28123 1.51563 1.25820 0.95138 1.03376 0.92697 0.86450 0.81514 0.77413 0.79234 1.21158 1.24310 1.10743 1.21716 0.91752 0.92880 1.51821 0.94896 1.19656 0.90172 0.88512 0.84392 1.86458 1.76807 1.57579 1.16839 1.23024 0.97127 0.97326 0.99803 1.23206 0.96208 0.97492 0.91784 1.66079 1.19669 1.13993 1.24332 1.22979 0.93049 0.95233 0.98434 1.22641 0.97578 0.99439 0.98449 1.22909 0.95986 0.98021 1.02640 1.23166 0.95559 0.91551 0.93746 0.92343 0.92716 0.77863 0.89945 0.92702 0.92522 0.88934 0.88778 0.90500 0.90213 0.90183 0.88707 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.13 13.96 21.45 0.30 -59.83 16 2 C 0.03 1.68 5.36 84.65 0.45 2.13 16 3 Si 0.93 45.73 22.48 68.60 1.54 47.27 16 4 H -0.28 -13.94 6.78 99.48 0.67 -13.27 16 5 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 6 H -0.19 -8.30 4.71 99.48 0.47 -7.83 16 7 C -0.54 -30.97 8.69 25.60 0.22 -30.75 16 8 H 0.03 2.09 7.77 -2.91 -0.02 2.07 16 9 C 0.21 9.59 0.79 -10.60 -0.01 9.59 16 10 O -0.57 -23.28 7.21 -148.98 -1.07 -24.36 16 11 C -0.13 -5.14 6.33 31.81 0.20 -4.94 16 12 C 0.04 1.31 6.20 86.72 0.54 1.85 16 13 N -0.52 -19.13 5.84 -852.64 -4.98 -24.11 16 14 C 0.03 0.90 6.59 86.49 0.57 1.47 16 15 C -0.14 -3.98 6.59 31.14 0.21 -3.77 16 16 C -0.16 -5.82 4.53 31.20 0.14 -5.68 16 17 C 0.07 2.97 2.60 45.34 0.12 3.09 16 18 H 0.06 2.98 6.55 -2.39 -0.02 2.96 16 19 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 20 H 0.37 13.31 9.07 -74.06 -0.67 12.64 16 21 H 0.08 2.72 8.06 -2.39 -0.02 2.70 16 22 H 0.05 2.30 7.66 -2.39 -0.02 2.28 16 23 H 0.06 1.65 7.70 -2.39 -0.02 1.63 16 24 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 25 H 0.09 2.15 7.87 -2.39 -0.02 2.13 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 3.60 5.67 -2.39 -0.01 3.58 16 30 H 0.05 1.80 6.12 -2.39 -0.01 1.79 16 Total: -1.00 -67.22 223.13 -1.59 -68.81 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.19 Total: 19.24 kcal Atomic # 6 Polarization: -29.46 SS G_CDS: 2.44 Total: -27.02 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -4.68 Total: -83.94 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -1.07 Total: -24.36 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.54 Total: 47.27 kcal Total: -67.22 -1.59 -68.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123427839.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.972 kcal (2) G-P(sol) polarization free energy of solvation -67.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds