Wall clock time and date at job start Mon Mar 30 2020 02:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00575 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00325 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00036 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 O 1.42895 * 110.14654 * 299.72235 * 9 7 2 11 11 C 1.53894 * 110.16730 * 61.45932 * 9 7 2 12 12 C 1.53612 * 105.67431 * 117.76592 * 11 9 7 13 13 N 1.47873 * 106.90043 * 17.98238 * 12 11 9 14 14 C 1.47882 * 108.84321 * 215.88604 * 13 12 11 15 15 C 1.54274 * 107.41826 * 111.32403 * 14 13 12 16 16 C 1.55249 * 103.10871 * 339.27096 * 15 14 13 17 17 C 1.48336 * 106.51628 * 331.78746 * 13 12 11 18 18 H 1.08999 * 111.44020 * 149.34409 * 17 13 12 19 19 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 20 20 H 0.96706 * 113.99719 * 59.30506 * 10 9 7 21 21 H 1.08999 * 110.20230 * 236.81766 * 11 9 7 22 22 H 1.08993 * 110.20933 * 358.71308 * 11 9 7 23 23 H 1.09001 * 109.97753 * 137.33699 * 12 11 9 24 24 H 1.09001 * 109.97822 * 258.58586 * 12 11 9 25 25 H 1.09002 * 109.85248 * 230.78012 * 14 13 12 26 26 H 1.08998 * 109.86318 * 351.85679 * 14 13 12 27 27 H 1.08999 * 110.68487 * 220.87112 * 15 14 13 28 28 H 1.08992 * 110.83710 * 97.74785 * 15 14 13 29 29 H 1.08998 * 111.06606 * 277.90007 * 16 15 14 30 30 H 1.08998 * 111.10169 * 153.90538 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 8 0.4338 -2.5904 1.1739 11 6 0.3826 -2.6160 -1.2599 12 6 0.9172 -3.8401 -2.0186 13 7 1.7067 -4.6336 -1.0523 14 6 2.8638 -5.2284 -1.7553 15 6 4.1346 -4.5357 -1.2211 16 6 3.5887 -3.2107 -0.6239 17 6 2.2314 -3.6755 -0.0489 18 1 2.3432 -4.1440 0.9289 19 1 -0.4850 0.8401 0.0004 20 1 -0.2184 -1.8810 1.2541 21 1 -0.6615 -2.7685 -0.9870 22 1 0.4856 -1.7196 -1.8714 23 1 0.0864 -4.4350 -2.3980 24 1 1.5523 -3.5185 -2.8440 25 1 2.9114 -6.2980 -1.5508 26 1 2.7726 -5.0586 -2.8281 27 1 4.8329 -4.3331 -2.0331 28 1 4.6095 -5.1396 -0.4481 29 1 3.4483 -2.4593 -1.4009 30 1 4.2415 -2.8376 0.1652 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123428117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:51 Heat of formation + Delta-G solvation = -65.799026 kcal Electronic energy + Delta-G solvation = -13484.673540 eV Core-core repulsion = 11278.637790 eV Total energy + Delta-G solvation = -2206.035750 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.10206 -37.21327 -34.16898 -33.62244 -31.56626 -28.86863 -27.39437 -25.32866 -22.05362 -21.67050 -20.57417 -18.53399 -17.44148 -17.05458 -16.21792 -15.80451 -15.01755 -14.82762 -14.44887 -14.05068 -13.72770 -13.26937 -13.00792 -12.80627 -12.55856 -12.38374 -12.12997 -12.03190 -11.73214 -11.54065 -11.26011 -10.98202 -10.58464 -10.09954 -9.32625 -8.18948 -6.33226 1.39889 1.42697 1.51635 2.38963 3.06291 3.29324 3.77981 3.85831 3.99892 4.27964 4.36313 4.40989 4.61035 4.63803 4.74352 4.97382 5.02986 5.03209 5.12888 5.19489 5.30431 5.39391 5.60340 5.63270 5.77771 5.92001 6.16697 6.31253 6.73548 7.36852 7.47082 8.86868 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.044487 B = 0.014293 C = 0.012521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.253155 B = 1958.506586 C = 2235.626179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.234 3.766 10 O -0.603 6.603 11 C -0.118 4.118 12 C 0.038 3.962 13 N -0.516 5.516 14 C 0.026 3.974 15 C -0.137 4.137 16 C -0.122 4.122 17 C 0.072 3.928 18 H 0.069 0.931 19 H 0.267 0.733 20 H 0.373 0.627 21 H 0.034 0.966 22 H 0.050 0.950 23 H 0.077 0.923 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.683 -5.100 -4.400 8.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.590 4.590 8 H 0.090 0.910 9 C 0.194 3.806 10 O -0.411 6.411 11 C -0.157 4.157 12 C -0.091 4.091 13 N -0.239 5.239 14 C -0.102 4.102 15 C -0.175 4.175 16 C -0.161 4.161 17 C -0.037 4.037 18 H 0.087 0.913 19 H 0.076 0.924 20 H 0.222 0.778 21 H 0.053 0.947 22 H 0.069 0.931 23 H 0.096 0.904 24 H 0.067 0.933 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.541 -5.990 -4.058 9.113 hybrid contribution 0.057 2.265 -0.285 2.284 sum 5.598 -3.725 -4.344 8.005 Atomic orbital electron populations 1.69813 1.06994 1.27944 1.50930 1.25757 0.95746 1.02362 0.93801 0.85559 0.78702 0.79204 0.78170 1.20060 1.21060 1.19468 1.22192 0.94269 0.91358 1.51210 0.90974 1.19436 0.87022 0.92177 0.81985 1.86132 1.53332 1.54158 1.47503 1.22564 0.98245 0.96148 0.98737 1.22981 0.97864 0.93874 0.94334 1.66239 1.18878 1.27701 1.11091 1.23273 0.88934 1.00131 0.97841 1.22887 0.97684 0.95734 1.01239 1.22929 0.95447 0.97431 1.00307 1.22875 0.94087 0.91149 0.95563 0.91326 0.92400 0.77752 0.94694 0.93130 0.90442 0.93298 0.89463 0.91252 0.89385 0.90375 0.91540 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.93 10.73 21.45 0.23 -49.70 16 2 C 0.02 1.22 4.99 84.66 0.42 1.64 16 3 Si 0.96 42.10 29.54 68.60 2.03 44.12 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -29.25 7.06 25.60 0.18 -29.07 16 8 H 0.07 3.70 5.47 -2.92 -0.02 3.69 16 9 C 0.23 11.94 1.00 -11.16 -0.01 11.93 16 10 O -0.60 -33.52 12.90 -148.98 -1.92 -35.44 16 11 C -0.12 -5.71 5.52 31.10 0.17 -5.54 16 12 C 0.04 1.49 6.31 86.32 0.54 2.04 16 13 N -0.52 -20.34 5.96 -854.69 -5.10 -25.44 16 14 C 0.03 0.79 6.76 86.55 0.58 1.37 16 15 C -0.14 -3.92 6.93 31.80 0.22 -3.70 16 16 C -0.12 -4.61 4.59 31.90 0.15 -4.47 16 17 C 0.07 3.17 3.62 45.25 0.16 3.33 16 18 H 0.07 3.21 8.06 -2.39 -0.02 3.19 16 19 H 0.27 13.88 8.31 -92.71 -0.77 13.10 16 20 H 0.37 21.07 7.26 -74.05 -0.54 20.53 16 21 H 0.03 1.75 7.97 -2.39 -0.02 1.74 16 22 H 0.05 2.61 7.14 -2.39 -0.02 2.59 16 23 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 24 H 0.05 1.80 7.21 -2.39 -0.02 1.78 16 25 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 26 H 0.07 1.89 7.06 -2.39 -0.02 1.88 16 27 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 2.72 6.91 -2.39 -0.02 2.70 16 30 H 0.07 2.51 7.77 -2.39 -0.02 2.50 16 Total: -1.00 -58.02 232.95 -1.74 -59.76 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.59 Total: 29.16 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: 2.42 Total: -22.46 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -4.87 Total: -75.13 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -1.92 Total: -35.44 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -58.02 -1.74 -59.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123428117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.041 kcal (2) G-P(sol) polarization free energy of solvation -58.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds