Wall clock time and date at job start Mon Mar 30 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 N 1.28940 * 126.47658 * 90.02458 * 12 11 10 14 14 N 1.28576 * 109.63637 * 179.97438 * 13 12 11 15 15 C 1.33386 * 109.88924 * 359.97438 * 14 13 12 16 16 N 1.39630 * 126.25391 * 179.97438 * 15 14 13 17 17 N 1.31685 * 107.48446 * 359.76038 * 15 14 13 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 21 21 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 22 22 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 23 23 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 24 24 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 25 25 H 0.96990 * 120.00088 * 0.02562 * 16 15 14 26 26 H 0.96998 * 119.99671 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4320 -6.1006 0.0005 13 7 2.9290 -6.6836 1.0376 14 7 3.7287 -7.6192 0.6657 15 6 3.7755 -7.6733 -0.6663 16 7 4.5352 -8.5613 -1.4305 17 7 2.9706 -6.7393 -1.1287 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8902 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 0.8531 -5.0451 0.8897 24 1 0.8537 -5.0446 -0.8902 25 1 5.0975 -9.2194 -0.9929 26 1 4.5007 -8.5199 -2.3989 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148952120.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:25 Heat of formation + Delta-G solvation = 114.984672 kcal Electronic energy + Delta-G solvation = -11775.640773 eV Core-core repulsion = 9506.196800 eV Total energy + Delta-G solvation = -2269.443973 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.71680 -36.00066 -34.65854 -33.06914 -31.64711 -30.62295 -27.42293 -24.39543 -22.35962 -22.08212 -20.52771 -17.64305 -16.72217 -16.40058 -16.24088 -15.55678 -14.51988 -14.35046 -13.55590 -12.93023 -12.33872 -12.07123 -11.65372 -11.42865 -11.02312 -10.91281 -10.70544 -10.44532 -10.17138 -9.94402 -9.57071 -9.24309 -8.58378 -8.43773 -6.08971 -4.11839 1.38876 2.06798 2.72847 3.28383 3.28908 3.34915 3.38738 4.39998 4.51043 5.14588 5.27765 5.40794 5.52836 5.64671 5.89387 6.27417 6.37049 6.71406 6.82802 7.05378 7.38536 7.50804 7.61015 7.88449 8.29195 8.66478 8.93643 9.52973 11.02293 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.077681 B = 0.006164 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.360857 B = 4541.376295 C = 4664.839070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.124 4.124 11 C 0.132 3.868 12 N -0.181 5.181 13 N 0.011 4.989 14 N -0.359 5.359 15 C 0.433 3.567 16 N -0.818 5.818 17 N -0.356 5.356 18 H 0.262 0.738 19 H 0.022 0.978 20 H 0.023 0.977 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.417 0.583 26 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 -12.872 -2.265 13.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.163 4.163 11 C 0.013 3.987 12 N -0.097 5.097 13 N 0.017 4.983 14 N -0.240 5.240 15 C 0.059 3.941 16 N -0.376 5.376 17 N -0.208 5.208 18 H 0.072 0.928 19 H 0.041 0.959 20 H 0.041 0.959 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.129 0.871 24 H 0.127 0.873 25 H 0.248 0.752 26 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.413 -12.404 -1.738 13.280 hybrid contribution 0.805 0.548 -0.735 1.219 sum 5.218 -11.856 -2.473 13.187 Atomic orbital electron populations 1.69951 1.06041 1.26851 1.50453 1.25004 0.94885 0.99342 0.95077 0.86552 0.79852 0.83214 0.78169 1.20597 1.21119 1.19833 1.21145 0.93102 0.90697 1.51191 0.92568 1.19060 0.93650 0.90573 0.97896 1.22133 1.00170 0.91819 1.02185 1.22648 0.88810 0.81579 1.05709 1.53553 1.31412 1.25078 0.99626 1.78282 1.03513 1.01014 1.15508 1.75198 1.20701 1.18043 1.10062 1.21689 0.92601 0.91362 0.88420 1.40833 1.50974 1.37890 1.07922 1.78858 1.19676 1.13772 1.08499 0.92835 0.95935 0.95859 0.92021 0.92005 0.87123 0.87318 0.75226 0.75318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.30 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 15 9 C 0.03 0.63 4.97 -27.89 -0.14 0.49 15 10 C -0.12 -2.43 5.48 -26.73 -0.15 -2.58 15 11 C 0.13 2.14 6.75 -4.04 -0.03 2.11 15 12 N -0.18 -3.12 4.34 -10.62 -0.05 -3.17 15 13 N 0.01 0.20 13.24 60.35 0.80 1.00 15 14 N -0.36 -6.07 12.32 30.02 0.37 -5.70 15 15 C 0.43 6.57 9.63 -320.88 -3.09 3.48 15 16 N -0.82 -8.00 9.13 30.04 0.27 -7.72 15 17 N -0.36 -6.02 12.79 30.03 0.38 -5.64 15 18 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 19 H 0.02 0.56 8.14 -51.93 -0.42 0.14 15 20 H 0.02 0.58 8.14 -51.93 -0.42 0.15 15 21 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15 22 H 0.06 1.26 8.14 -51.93 -0.42 0.83 15 23 H 0.11 1.59 8.14 -51.93 -0.42 1.17 15 24 H 0.11 1.61 8.14 -51.93 -0.42 1.19 15 25 H 0.42 3.03 8.96 -40.82 -0.37 2.67 15 26 H 0.42 3.14 8.96 -40.82 -0.37 2.78 15 LS Contribution 240.18 15.07 3.62 3.62 Total: -1.00 -31.56 240.18 -5.51 -37.07 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -2.81 Total: -0.81 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -3.81 Total: -9.66 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 2.52 Total: -46.53 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -31.56 -5.51 -37.07 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148952120.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.053 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds