Wall clock time and date at job start Mon Mar 30 2020 02:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48506 * 109.46838 * 269.99383 * 3 2 1 5 5 H 1.48497 * 109.47419 * 29.99534 * 3 2 1 6 6 H 1.48499 * 109.47011 * 150.00096 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.46840 * 180.02562 * 11 10 9 13 13 N 1.28940 * 126.47658 * 90.02458 * 12 11 10 14 14 N 1.28576 * 109.63637 * 179.97438 * 13 12 11 15 15 C 1.33386 * 109.88924 * 359.97438 * 14 13 12 16 16 N 1.39630 * 126.25391 * 179.97438 * 15 14 13 17 17 N 1.31685 * 107.48446 * 359.76038 * 15 14 13 18 18 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 19 19 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 20 20 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 21 21 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 22 22 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 23 23 H 1.09001 * 109.47194 * 299.99650 * 11 10 9 24 24 H 1.08992 * 109.47399 * 59.99823 * 11 10 9 25 25 H 0.96990 * 120.00088 * 0.02562 * 16 15 14 26 26 H 0.96998 * 119.99671 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4800 -4.9871 -0.0001 12 7 2.4320 -6.1006 0.0005 13 7 2.9290 -6.6836 1.0376 14 7 3.7287 -7.6192 0.6657 15 6 3.7755 -7.6733 -0.6663 16 7 4.5352 -8.5613 -1.4305 17 7 2.9706 -6.7393 -1.1287 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8897 20 1 0.6240 -2.5566 0.8902 21 1 2.8718 -3.6044 0.8905 22 1 2.8718 -3.6044 -0.8895 23 1 0.8531 -5.0451 0.8897 24 1 0.8537 -5.0446 -0.8902 25 1 5.0975 -9.2194 -0.9929 26 1 4.5007 -8.5199 -2.3989 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148952120.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:25 Heat of formation + Delta-G solvation = 93.876536 kcal Electronic energy + Delta-G solvation = -11776.556091 eV Core-core repulsion = 9506.196800 eV Total energy + Delta-G solvation = -2270.359290 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.97734 -37.35941 -36.01184 -34.80163 -33.17631 -31.97303 -29.09248 -26.13405 -23.78725 -23.36206 -22.20686 -18.99541 -18.26361 -17.69325 -17.48560 -16.87398 -16.46552 -15.87402 -14.84722 -14.54214 -14.18152 -13.59137 -13.18476 -12.95882 -12.67053 -12.61936 -12.46641 -11.83598 -11.69914 -11.61158 -11.41622 -11.11859 -10.55411 -9.65266 -8.21482 -6.31274 0.08288 0.84645 1.41149 1.41569 1.52049 1.52563 2.23607 2.41175 3.12885 3.29694 3.94262 3.97022 4.30133 4.34356 4.64722 4.69079 4.84467 5.05667 5.34502 5.48208 5.66750 5.81361 6.12331 6.21969 6.61179 6.83398 7.37602 7.46708 8.89847 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.077681 B = 0.006164 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.360857 B = 4541.376295 C = 4664.839070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.106 4.106 11 C 0.140 3.860 12 N -0.187 5.187 13 N -0.001 5.001 14 N -0.369 5.369 15 C 0.432 3.568 16 N -0.792 5.792 17 N -0.376 5.376 18 H 0.265 0.735 19 H 0.009 0.991 20 H 0.011 0.989 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.129 0.871 24 H 0.123 0.877 25 H 0.430 0.570 26 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 -13.373 -2.612 14.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.193 4.193 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.145 4.145 11 C 0.020 3.980 12 N -0.103 5.103 13 N 0.005 4.995 14 N -0.251 5.251 15 C 0.058 3.942 16 N -0.354 5.354 17 N -0.229 5.229 18 H 0.074 0.926 19 H 0.027 0.973 20 H 0.029 0.971 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.147 0.853 24 H 0.141 0.859 25 H 0.264 0.736 26 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 5.334 -12.943 -2.106 14.157 hybrid contribution 0.576 0.617 -0.650 1.065 sum 5.910 -12.326 -2.756 13.945 Atomic orbital electron populations 1.70054 1.07448 1.27863 1.51325 1.25851 0.95762 1.02956 0.94704 0.85527 0.78659 0.78910 0.78444 1.19858 1.20574 1.19225 1.21600 0.93385 0.92440 1.50996 0.92766 1.18916 0.93982 0.91360 0.96535 1.21785 0.99025 0.92341 1.01388 1.22511 0.88223 0.79762 1.07473 1.53503 1.31734 1.25315 0.99728 1.78249 1.03864 1.01460 1.15963 1.75168 1.20808 1.18118 1.10991 1.22071 0.92397 0.91470 0.88229 1.40929 1.49492 1.36561 1.08402 1.78826 1.20764 1.14740 1.08567 0.92623 0.97258 0.97067 0.92681 0.92856 0.85280 0.85850 0.73589 0.73800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.25 13.29 21.45 0.28 -53.96 15 2 C 0.01 0.32 5.46 84.65 0.46 0.79 15 3 Si 0.96 43.51 29.54 68.60 2.03 45.54 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 15 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 7 C -0.55 -30.16 9.11 25.60 0.23 -29.92 15 8 H 0.05 2.94 7.74 -2.91 -0.02 2.91 15 9 C 0.03 1.46 4.97 29.85 0.15 1.61 15 10 C -0.11 -4.14 5.48 30.59 0.17 -3.97 15 11 C 0.14 4.38 6.75 86.38 0.58 4.96 15 12 N -0.19 -6.23 4.34 -187.50 -0.81 -7.05 15 13 N 0.00 -0.02 13.24 37.02 0.49 0.47 15 14 N -0.37 -11.94 12.32 -58.92 -0.73 -12.66 15 15 C 0.43 12.31 9.63 260.81 2.51 14.83 15 16 N -0.79 -13.50 9.13 -58.88 -0.54 -14.03 15 17 N -0.38 -12.16 12.79 -58.90 -0.75 -12.91 15 18 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 19 H 0.01 0.46 8.14 -2.39 -0.02 0.44 15 20 H 0.01 0.56 8.14 -2.39 -0.02 0.54 15 21 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 22 H 0.05 2.15 8.14 -2.39 -0.02 2.13 15 23 H 0.13 3.55 8.14 -2.39 -0.02 3.54 15 24 H 0.12 3.50 8.14 -2.39 -0.02 3.49 15 25 H 0.43 5.08 8.96 -92.72 -0.83 4.25 15 26 H 0.43 5.32 8.96 -92.71 -0.83 4.49 15 Total: -1.00 -66.23 240.18 3.63 -62.60 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -0.45 Total: 3.72 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.11 Total: -11.71 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -2.06 Total: -100.15 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -66.23 3.63 -62.60 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148952120.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.481 kcal (2) G-P(sol) polarization free energy of solvation -66.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds