Wall clock time and date at job start Mon Mar 30 2020 02:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86793 * 119.99907 * 2 1 4 4 H 1.48503 * 109.47044 * 240.00172 * 3 2 1 5 5 H 1.48495 * 109.47211 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47236 * 120.00235 * 3 2 1 7 7 C 1.38817 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99599 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.49701 * 126.05950 * 359.97438 * 9 7 2 11 11 C 1.50903 * 102.26604 * 154.88199 * 10 9 7 12 12 H 1.09000 * 109.47147 * 290.45993 * 11 10 9 13 13 C 1.50291 * 125.76422 * 155.90892 * 11 10 9 14 14 C 1.55936 * 104.15689 * 214.83702 * 13 11 10 15 15 C 1.56410 * 105.78582 * 7.53685 * 14 13 11 16 16 H 1.08997 * 111.03431 * 266.92550 * 15 14 13 17 17 O 1.42903 * 110.99701 * 143.10004 * 15 14 13 18 18 C 1.51001 * 101.59472 * 25.02565 * 15 14 13 19 19 H 1.08997 * 110.05967 * 69.35881 * 18 15 14 20 20 C 1.48545 * 126.17399 * 179.56046 * 9 7 2 21 21 H 0.96993 * 119.99947 * 359.97438 * 1 2 3 22 22 H 1.09001 * 110.84154 * 36.68706 * 10 9 7 23 23 H 1.09001 * 111.01834 * 273.15416 * 10 9 7 24 24 H 1.09004 * 110.49511 * 333.50561 * 13 11 10 25 25 H 1.08999 * 110.49541 * 96.16700 * 13 11 10 26 26 H 1.08999 * 110.18930 * 248.46114 * 14 13 11 27 27 H 1.09002 * 110.19005 * 126.61241 * 14 13 11 28 28 H 0.96700 * 114.00311 * 67.79369 * 17 15 14 29 29 H 1.09001 * 110.07087 * 53.80976 * 20 9 7 30 30 H 1.09002 * 110.33355 * 291.72186 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1631 -2.5461 0.0005 11 6 -0.3414 -3.9073 -0.6259 12 1 -0.0719 -3.8599 -1.6809 13 6 -1.5269 -4.8119 -0.4386 14 6 -0.9179 -6.2473 -0.4556 15 6 0.6339 -6.0511 -0.4605 16 1 1.0244 -6.0459 -1.4781 17 8 1.2792 -7.0533 0.3277 18 6 0.7696 -4.6896 0.1783 19 1 0.4990 -4.7428 1.2328 20 6 1.9256 -3.7470 -0.0103 21 1 -0.4850 0.8400 0.0004 22 1 -0.6354 -1.7744 -0.6074 23 1 -0.5569 -2.5321 1.0168 24 1 -2.0107 -4.6140 0.5180 25 1 -2.2348 -4.6880 -1.2581 26 1 -1.2325 -6.7788 -1.3537 27 1 -1.2247 -6.7968 0.4344 28 1 1.2186 -7.9445 -0.0427 29 1 2.6355 -3.8483 0.8106 30 1 2.4179 -3.9368 -0.9641 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156459377.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:07 Heat of formation + Delta-G solvation = -14.301495 kcal Electronic energy + Delta-G solvation = -12991.154591 eV Core-core repulsion = 10787.351941 eV Total energy + Delta-G solvation = -2203.802650 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.56229 -36.09857 -33.87988 -31.56689 -28.70412 -28.01598 -24.81272 -24.17151 -20.79962 -19.56987 -19.23296 -16.80396 -16.61843 -15.45198 -14.61275 -14.18742 -13.86214 -13.40423 -13.04462 -12.20028 -12.04351 -11.67729 -11.42131 -11.25810 -10.82106 -10.75510 -10.30026 -10.21222 -9.99348 -9.83470 -9.63676 -9.57141 -9.16669 -8.61605 -6.80109 -5.60395 -3.01021 3.44200 3.47798 3.49457 4.42980 4.50386 4.71230 4.96031 5.24191 5.52226 5.55392 5.62024 5.69295 5.85195 5.89144 6.14330 6.24798 6.35916 6.44304 6.55230 6.63198 6.77700 6.91896 7.10675 7.55978 7.63605 7.85484 7.87533 8.34049 9.22649 9.84626 10.52793 11.44963 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.069885 B = 0.009712 C = 0.008733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.562227 B = 2882.285034 C = 3205.559307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.170 3.830 11 C -0.127 4.127 12 H 0.067 0.933 13 C -0.099 4.099 14 C -0.152 4.152 15 C 0.117 3.883 16 H 0.062 0.938 17 O -0.563 6.563 18 C -0.116 4.116 19 H 0.077 0.923 20 C 0.152 3.848 21 H 0.252 0.748 22 H 0.106 0.894 23 H 0.015 0.985 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.369 0.631 29 H 0.029 0.971 30 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -11.222 -2.087 11.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.746 3.254 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.147 4.147 12 H 0.085 0.915 13 C -0.137 4.137 14 C -0.190 4.190 15 C 0.058 3.942 16 H 0.080 0.920 17 O -0.368 6.368 18 C -0.135 4.135 19 H 0.095 0.905 20 C 0.027 3.973 21 H 0.062 0.938 22 H 0.123 0.877 23 H 0.033 0.967 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.214 0.786 29 H 0.047 0.953 30 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -1.885 -10.439 -1.698 10.743 hybrid contribution 0.345 0.310 -0.306 0.556 sum -1.540 -10.128 -2.004 10.439 Atomic orbital electron populations 1.69804 1.04858 1.24810 1.57830 1.24776 0.95749 0.97602 1.02768 0.86140 0.78365 0.83077 0.77852 1.21237 1.21587 1.21268 1.19065 0.90472 0.82451 1.42749 0.90495 1.45553 1.01359 0.99455 1.87245 1.21183 0.84658 0.91704 0.97804 1.22504 0.94124 0.98159 0.99936 0.91451 1.21400 0.97371 0.93138 1.01796 1.23633 0.95734 0.98062 1.01570 1.22154 0.90868 0.87539 0.93670 0.92038 1.86617 1.78652 1.19280 1.52227 1.22047 0.99115 0.91809 1.00573 0.90466 1.20415 0.93424 0.85681 0.97829 0.93758 0.87652 0.96674 0.91574 0.91946 0.92029 0.91167 0.78570 0.95261 0.96167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 10.14 55.49 0.56 -26.96 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 3 Si 0.92 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 7 C -0.22 -6.34 10.33 -15.06 -0.16 -6.50 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 N -0.61 -16.43 3.48 -171.68 -0.60 -17.03 16 10 C 0.17 4.28 5.77 -3.31 -0.02 4.26 16 11 C -0.13 -2.52 2.80 -90.34 -0.25 -2.78 16 12 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 13 C -0.10 -1.55 6.69 -26.51 -0.18 -1.73 16 14 C -0.15 -2.05 6.72 -23.33 -0.16 -2.21 16 15 C 0.12 1.81 4.09 -25.90 -0.11 1.70 16 16 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 17 O -0.56 -8.26 13.43 -35.23 -0.47 -8.73 16 18 C -0.12 -2.27 2.50 -90.26 -0.23 -2.50 16 19 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 20 C 0.15 3.45 7.07 -4.24 -0.03 3.42 16 21 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 22 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.91 8.11 -51.93 -0.42 0.48 16 28 H 0.37 3.43 9.12 45.56 0.42 3.85 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 241.98 15.07 3.65 3.65 Total: -1.00 -31.58 241.98 -6.77 -38.35 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.67 Total: 0.00 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.22 Total: -6.83 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.04 Total: -43.98 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.47 Total: -8.73 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.58 -6.77 -38.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156459377.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.053 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds