Wall clock time and date at job start Mon Mar 30 2020 02:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86804 * 119.99732 * 2 1 4 4 H 1.48501 * 109.47023 * 269.99691 * 3 2 1 5 5 H 1.48497 * 109.47393 * 30.00022 * 3 2 1 6 6 H 1.48505 * 109.46455 * 150.00259 * 3 2 1 7 7 C 1.37872 * 120.00083 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00310 * 175.24401 * 7 2 1 9 9 C 1.50710 * 119.99856 * 355.25168 * 7 2 1 10 10 O 1.42904 * 109.57679 * 65.07477 * 9 7 2 11 11 C 1.53139 * 109.57701 * 304.67648 * 9 7 2 12 12 N 1.46907 * 109.36760 * 240.18541 * 11 9 7 13 13 C 1.46934 * 111.05726 * 298.00761 * 12 11 9 14 14 C 1.53132 * 109.35221 * 61.96778 * 13 12 11 15 15 C 1.53383 * 109.57601 * 185.33187 * 9 7 2 16 16 C 1.53399 * 108.59628 * 60.05317 * 15 9 7 17 17 C 1.46943 * 111.05525 * 62.00884 * 12 11 9 18 18 H 0.96996 * 120.00140 * 185.19700 * 1 2 3 19 19 H 0.96704 * 113.99532 * 294.97627 * 10 9 7 20 20 H 1.08995 * 109.48874 * 0.15893 * 11 9 7 21 21 H 1.09001 * 109.48711 * 120.21713 * 11 9 7 22 22 H 1.09004 * 109.49579 * 302.00225 * 13 12 11 23 23 H 1.09002 * 109.49404 * 181.93070 * 13 12 11 24 24 H 1.09005 * 109.57163 * 240.24418 * 14 13 12 25 25 H 1.08998 * 109.57820 * 119.86329 * 14 13 12 26 26 H 1.08996 * 110.11812 * 299.41098 * 15 9 7 27 27 H 1.08997 * 109.57306 * 178.80734 * 16 15 9 28 28 H 1.08995 * 109.57342 * 299.19355 * 16 15 9 29 29 H 1.08994 * 109.49398 * 58.00919 * 17 12 11 30 30 H 1.08997 * 109.48942 * 178.05846 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0817 -1.1957 -0.0770 9 6 1.2549 -2.4969 0.1092 10 8 0.4386 -2.6777 -1.0498 11 6 0.3750 -2.4797 1.3624 12 7 0.7761 -3.5759 2.2544 13 6 0.5817 -4.8808 1.6075 14 6 1.4672 -4.9662 0.3610 15 6 2.2529 -3.6563 0.2208 16 6 3.1110 -3.4441 1.4745 17 6 2.1665 -3.4118 2.7003 18 1 -0.4850 -0.8365 0.0761 19 1 -0.2685 -2.0241 -1.1386 20 1 0.4964 -1.5276 1.8789 21 1 -0.6688 -2.6075 1.0757 22 1 -0.4637 -4.9919 1.3193 23 1 0.8541 -5.6753 2.3022 24 1 0.8434 -5.1140 -0.5206 25 1 2.1620 -5.7998 0.4630 26 1 2.8864 -3.6922 -0.6654 27 1 3.8127 -4.2713 1.5810 28 1 3.6595 -2.5063 1.3871 29 1 2.2750 -2.4534 3.2080 30 1 2.4260 -4.2181 3.3863 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201253246.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:24 Heat of formation + Delta-G solvation = -69.710784 kcal Electronic energy + Delta-G solvation = -13791.225030 eV Core-core repulsion = 11585.019654 eV Total energy + Delta-G solvation = -2206.205377 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.69088 -37.33401 -34.35814 -33.04398 -31.74197 -30.28591 -26.86288 -23.96471 -23.79800 -22.94756 -19.81420 -18.44740 -17.71392 -17.33828 -16.57008 -15.71777 -15.60241 -14.68644 -14.37214 -14.06573 -13.60569 -13.45659 -13.02762 -12.76852 -12.71545 -12.55919 -12.33074 -12.11056 -11.96935 -11.62178 -11.24304 -11.13594 -10.64070 -10.14125 -8.99266 -8.61326 -6.43193 1.50946 1.57367 1.75974 2.51163 3.03411 3.14837 3.62207 3.82274 3.97391 4.22045 4.30741 4.38687 4.40037 4.44382 4.49393 4.73011 4.92902 4.94249 4.96951 5.05773 5.15134 5.31576 5.36515 5.48958 5.91976 6.05002 6.16676 6.25182 6.56304 7.03928 7.34967 8.69783 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048341 B = 0.015033 C = 0.014082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.074946 B = 1862.148380 C = 1987.895503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.016 4.016 3 Si 1.112 2.888 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.620 4.620 8 H 0.043 0.957 9 C 0.195 3.805 10 O -0.601 6.601 11 C 0.054 3.946 12 N -0.538 5.538 13 C 0.055 3.945 14 C -0.139 4.139 15 C -0.072 4.072 16 C -0.130 4.130 17 C 0.059 3.941 18 H 0.263 0.737 19 H 0.361 0.639 20 H 0.053 0.947 21 H 0.043 0.957 22 H 0.064 0.936 23 H 0.101 0.899 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -6.897 4.431 9.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.215 4.215 3 Si 0.935 3.065 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.658 4.658 8 H 0.061 0.939 9 C 0.156 3.844 10 O -0.408 6.408 11 C -0.075 4.075 12 N -0.259 5.259 13 C -0.073 4.073 14 C -0.178 4.178 15 C -0.091 4.091 16 C -0.169 4.169 17 C -0.070 4.070 18 H 0.076 0.924 19 H 0.209 0.791 20 H 0.072 0.928 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.119 0.881 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.652 -5.789 4.722 8.315 hybrid contribution 0.106 -0.863 -1.027 1.346 sum 3.757 -6.652 3.695 8.486 Atomic orbital electron populations 1.70993 1.07424 1.30735 1.47839 1.27077 0.96625 1.05914 0.91929 0.82974 0.74321 0.71764 0.77432 1.20540 1.20623 1.19812 1.22750 0.94829 0.93224 1.55036 0.93852 1.19833 0.88355 0.93753 0.82488 1.86285 1.48044 1.57091 1.49404 1.22807 0.96914 0.93723 0.94029 1.62600 1.22229 1.02456 1.38600 1.22242 0.99252 0.91344 0.94455 1.22142 0.99368 0.96903 0.99396 1.20965 0.96077 0.94292 0.97814 1.22386 0.98088 1.01928 0.94525 1.22458 0.86064 1.02345 0.96092 0.92412 0.79115 0.92797 0.93858 0.91770 0.88073 0.93164 0.89950 0.93633 0.89902 0.92628 0.92211 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.31 12.69 21.45 0.27 -53.03 16 2 C -0.02 -0.89 4.85 84.65 0.41 -0.48 16 3 Si 1.11 49.39 29.91 68.60 2.05 51.44 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.62 -34.16 7.28 25.60 0.19 -33.98 16 8 H 0.04 2.42 6.92 -2.91 -0.02 2.40 16 9 C 0.20 9.80 0.54 -11.36 -0.01 9.79 16 10 O -0.60 -31.96 12.20 -148.98 -1.82 -33.77 16 11 C 0.05 2.59 3.93 86.35 0.34 2.92 16 12 N -0.54 -20.98 5.22 -891.77 -4.65 -25.63 16 13 C 0.06 1.85 6.09 86.34 0.53 2.37 16 14 C -0.14 -4.96 5.62 30.77 0.17 -4.78 16 15 C -0.07 -3.09 2.63 -10.40 -0.03 -3.12 16 16 C -0.13 -4.80 5.63 31.33 0.18 -4.62 16 17 C 0.06 2.05 6.13 86.90 0.53 2.58 16 18 H 0.26 14.87 4.07 -92.71 -0.38 14.49 16 19 H 0.36 19.31 6.60 -74.05 -0.49 18.82 16 20 H 0.05 2.87 6.72 -2.39 -0.02 2.85 16 21 H 0.04 2.11 7.44 -2.39 -0.02 2.09 16 22 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 24 H 0.05 1.93 7.70 -2.38 -0.02 1.92 16 25 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.05 2.27 6.71 -2.39 -0.02 2.25 16 29 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -61.55 227.19 -0.81 -62.35 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 1.03 Total: 27.96 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 2.31 Total: -29.31 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -4.38 Total: -78.67 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.82 Total: -33.77 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.05 Total: 51.44 kcal Total: -61.55 -0.81 -62.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201253246.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.358 kcal (2) G-P(sol) polarization free energy of solvation -61.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds