Wall clock time and date at job start Mon Mar 30 2020 02:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47290 * 2 1 4 4 F 1.39903 * 109.46994 * 120.00349 * 2 1 3 5 5 C 1.53005 * 109.46982 * 240.00088 * 2 1 3 6 6 N 1.46508 * 109.46799 * 175.00307 * 5 2 1 7 7 C 1.36645 * 124.78620 * 269.95939 * 6 5 2 8 8 C 1.34323 * 109.39080 * 180.02562 * 7 6 5 9 9 C 1.46974 * 106.48547 * 359.97438 * 8 7 6 10 10 C 1.41350 * 127.11310 * 180.02562 * 9 8 7 11 11 H 1.08000 * 119.99868 * 179.97438 * 10 9 8 12 12 C 1.39675 * 119.99863 * 359.95509 * 10 9 8 13 13 N 1.31054 * 119.99925 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99750 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47207 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47030 * 120.00395 * 14 12 10 17 17 H 1.48501 * 109.47227 * 239.99937 * 14 12 10 18 18 C 1.34908 * 124.78969 * 89.99951 * 6 5 2 19 19 H 1.09000 * 109.47198 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47288 * 299.99935 * 1 2 3 21 21 H 1.09003 * 109.46647 * 60.00192 * 1 2 3 22 22 H 1.09001 * 109.46882 * 55.00265 * 5 2 1 23 23 H 1.08997 * 109.47351 * 295.00031 * 5 2 1 24 24 H 1.08004 * 125.31027 * 0.03602 * 7 6 5 25 25 H 1.07994 * 126.76281 * 179.97438 * 8 7 6 26 26 H 0.97000 * 119.99748 * 179.97438 * 13 12 10 27 27 H 1.08002 * 126.04213 * 0.23098 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6596 1.1423 5 6 2.0400 -0.7213 -1.2493 6 7 3.5001 -0.6179 -1.3109 7 6 4.1849 0.3886 -1.9316 8 6 5.5049 0.1773 -1.7998 9 6 5.6534 -1.0665 -1.0310 10 6 6.8610 -1.6906 -0.6435 11 1 6.8362 -2.6089 -0.0756 12 6 8.0863 -1.1199 -0.9955 13 7 8.1163 -0.0055 -1.6845 14 14 9.6822 -1.9444 -0.4828 15 1 9.3775 -3.1805 0.2817 16 1 10.4702 -2.2926 -1.6924 17 1 10.4676 -1.0158 0.3692 18 6 4.3582 -1.5034 -0.7636 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.6054 -0.2617 -2.1370 23 1 1.7516 -1.7715 -1.2057 24 1 3.7351 1.2240 -2.4476 25 1 6.3004 0.7989 -2.1831 26 1 8.9672 0.3910 -1.9286 27 1 4.0886 -2.3955 -0.2179 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212245804.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:34 Heat of formation + Delta-G solvation = -12.555775 kcal Electronic energy + Delta-G solvation = -12162.687241 eV Core-core repulsion = 9835.499987 eV Total energy + Delta-G solvation = -2327.187255 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.25291 -39.02162 -34.01951 -32.79827 -29.83581 -27.86707 -25.89949 -23.93440 -21.41476 -19.12915 -18.35662 -16.89556 -16.27530 -15.33244 -15.12432 -14.66621 -14.10462 -12.82916 -12.71390 -12.64515 -12.24981 -12.09301 -11.60757 -11.38441 -11.09645 -10.88426 -10.70752 -10.55069 -10.47272 -9.76264 -9.21086 -9.06322 -6.89445 -6.64805 -6.20322 -3.78888 3.17157 3.29531 3.35515 3.75247 4.20171 4.30446 4.57782 4.76489 4.84962 5.06724 5.14734 5.37018 5.63305 5.80852 5.87124 5.96426 6.17413 6.25134 6.78599 7.48439 7.57819 7.80026 8.08768 8.46218 8.64117 9.06297 9.10007 9.45504 9.45838 10.76097 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.073059 B = 0.008398 C = 0.007876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.158470 B = 3333.464009 C = 3554.128717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.082 0.918 4 F -0.207 7.207 5 C 0.094 3.906 6 N -0.461 5.461 7 C -0.066 4.066 8 C -0.188 4.188 9 C 0.034 3.966 10 C -0.440 4.440 11 H 0.065 0.935 12 C 0.068 3.932 13 N -0.833 5.833 14 Si 0.906 3.094 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.279 1.279 18 C -0.170 4.170 19 H 0.066 0.934 20 H 0.067 0.933 21 H 0.073 0.927 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.128 0.872 25 H 0.153 0.847 26 H 0.266 0.734 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 1.232 0.322 10.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.034 3.966 3 H 0.101 0.899 4 F -0.188 7.188 5 C -0.031 4.031 6 N -0.144 5.144 7 C -0.192 4.192 8 C -0.217 4.217 9 C 0.028 3.972 10 C -0.474 4.474 11 H 0.083 0.917 12 C -0.143 4.143 13 N -0.464 5.464 14 Si 0.733 3.267 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.205 1.205 18 C -0.294 4.294 19 H 0.085 0.915 20 H 0.086 0.914 21 H 0.092 0.908 22 H 0.104 0.896 23 H 0.100 0.900 24 H 0.146 0.854 25 H 0.171 0.829 26 H 0.077 0.923 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.684 1.304 0.281 10.767 hybrid contribution 0.705 -0.347 0.305 0.843 sum -9.979 0.957 0.586 10.042 Atomic orbital electron populations 1.22343 0.94465 1.03402 1.03282 1.22088 0.93966 0.97077 0.83485 0.89949 1.92836 1.90332 1.83133 1.52486 1.22016 0.82581 1.01633 0.96909 1.42739 1.02473 1.21919 1.47307 1.21382 0.93242 0.95801 1.08766 1.22694 0.93040 1.00275 1.05657 1.18523 0.90421 0.93010 0.95247 1.18757 0.89491 1.07944 1.31247 0.91703 1.25657 1.00205 0.94478 0.93968 1.69793 1.26263 1.17324 1.32977 0.86303 0.81932 0.79843 0.78638 1.19096 1.20536 1.20518 1.21441 0.89191 1.00820 1.17935 0.91455 0.91438 0.90775 0.89612 0.90007 0.85448 0.82940 0.92310 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.65 37.16 0.36 -1.49 15 2 C 0.07 1.07 4.22 -26.73 -0.11 0.96 15 3 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 4 F -0.21 -3.91 16.97 2.25 0.04 -3.87 15 5 C 0.09 1.53 5.74 -4.03 -0.02 1.50 15 6 N -0.46 -10.36 2.68 -116.28 -0.31 -10.67 15 7 C -0.07 -1.56 11.30 -16.79 -0.19 -1.75 15 8 C -0.19 -5.19 9.88 -37.43 -0.37 -5.56 15 9 C 0.03 1.00 6.10 -104.79 -0.64 0.36 15 10 C -0.44 -12.99 9.40 -37.86 -0.36 -13.34 15 11 H 0.06 1.85 7.84 -52.49 -0.41 1.44 15 12 C 0.07 1.88 5.49 -17.35 -0.10 1.79 15 13 N -0.83 -23.55 10.42 55.53 0.58 -22.97 15 14 Si 0.91 20.83 29.56 -169.99 -5.02 15.80 15 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 15 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 18 C -0.17 -4.44 11.34 -15.81 -0.18 -4.62 15 19 H 0.07 0.67 8.14 -51.93 -0.42 0.24 15 20 H 0.07 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.07 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.09 1.15 8.13 -51.93 -0.42 0.72 15 23 H 0.08 1.27 8.13 -51.93 -0.42 0.85 15 24 H 0.13 2.50 8.06 -52.48 -0.42 2.07 15 25 H 0.15 4.35 6.02 -52.49 -0.32 4.03 15 26 H 0.27 6.92 8.30 -40.82 -0.34 6.58 15 27 H 0.13 3.17 8.06 -52.49 -0.42 2.75 15 LS Contribution 241.18 15.07 3.63 3.63 Total: -1.00 -31.79 241.18 -5.93 -37.72 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -3.24 Total: 2.50 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -1.61 Total: -22.14 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: 0.27 Total: -33.64 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.04 Total: -3.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -31.79 -5.93 -37.72 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212245804.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.167 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds