Wall clock time and date at job start Mon Mar 30 2020 01:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48504 * 109.47129 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47049 * 120.00493 * 3 2 1 6 6 H 1.48499 * 109.47335 * 240.00529 * 3 2 1 7 7 C 1.40073 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99845 * 156.71187 * 7 2 1 9 9 C 1.39947 * 119.99905 * 336.70657 * 7 2 1 10 10 C 1.39745 * 126.35407 * 340.26769 * 9 7 2 11 11 C 1.39307 * 107.05118 * 179.84483 * 10 9 7 12 12 C 1.35972 * 108.09070 * 0.41860 * 11 10 9 13 13 N 1.36168 * 109.04988 * 359.73742 * 12 11 10 14 14 C 1.46500 * 125.74166 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47036 * 265.02183 * 14 13 12 16 16 C 1.52999 * 109.47437 * 180.02562 * 15 14 13 17 17 F 1.39896 * 109.47503 * 180.02562 * 16 15 14 18 18 H 0.97003 * 119.99983 * 173.97401 * 1 2 3 19 19 H 1.07996 * 126.47788 * 359.97438 * 10 9 7 20 20 H 1.08000 * 125.95718 * 180.13250 * 11 10 9 21 21 H 1.07996 * 125.47800 * 179.77642 * 12 11 10 22 22 H 1.08999 * 109.47459 * 25.02399 * 14 13 12 23 23 H 1.09002 * 109.46995 * 145.02553 * 14 13 12 24 24 H 1.08999 * 109.47173 * 300.00391 * 15 14 13 25 25 H 1.09002 * 109.46927 * 60.00328 * 15 14 13 26 26 H 1.09008 * 109.47105 * 300.00089 * 16 15 14 27 27 H 1.08996 * 109.47162 * 59.99824 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7465 0.0006 5 1 3.0965 1.6963 1.2125 6 1 3.0963 1.6964 -1.2125 7 6 2.0090 -1.2131 -0.0005 8 1 3.0230 -1.2510 -0.3703 9 6 1.3947 -2.3759 0.4782 10 6 0.2813 -2.4379 1.3203 11 6 0.0089 -3.7865 1.5386 12 6 0.9316 -4.5190 0.8597 13 7 1.7799 -3.6740 0.2110 14 6 2.9112 -4.0754 -0.6287 15 6 4.1924 -4.0756 0.2077 16 6 5.3741 -4.4941 -0.6693 17 9 6.5454 -4.4948 0.0956 18 1 -0.4850 -0.8354 -0.0882 19 1 -0.2661 -1.5989 1.7239 20 1 -0.7925 -4.1815 2.1454 21 1 0.9832 -5.5975 0.8379 22 1 2.7344 -5.0762 -1.0226 23 1 3.0172 -3.3730 -1.4555 24 1 4.3692 -3.0747 0.6016 25 1 4.0864 -4.7779 1.0345 26 1 5.1974 -5.4949 -1.0636 27 1 5.4799 -3.7915 -1.4959 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212246526.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:24 Heat of formation + Delta-G solvation = -30.356395 kcal Electronic energy + Delta-G solvation = -12219.647246 eV Core-core repulsion = 9891.688099 eV Total energy + Delta-G solvation = -2327.959147 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.49724 -39.34221 -34.25821 -33.43787 -29.66260 -27.95304 -24.83608 -24.20315 -21.65928 -19.28288 -18.92294 -17.36848 -16.17289 -15.64076 -15.21920 -14.59010 -14.07511 -13.70478 -13.13702 -12.77120 -12.40448 -11.98968 -11.35567 -11.23084 -10.92937 -10.81534 -10.63506 -10.52557 -10.34058 -10.27657 -9.49821 -8.89990 -7.32756 -6.93470 -6.88028 -4.15285 3.15510 3.25149 3.44350 3.73217 4.08281 4.25756 4.46003 4.87085 4.97537 5.05688 5.25698 5.37072 5.41915 5.78536 5.95604 6.16904 6.31994 6.47546 6.77596 7.13189 7.61426 7.62841 7.91925 8.03281 8.33311 8.59055 8.87781 9.10226 9.32210 10.34632 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.012743 C = 0.009108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.774188 B = 2196.805762 C = 3073.580181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.047 3.953 3 Si 1.068 2.932 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.227 3.773 10 C -0.345 4.345 11 C -0.160 4.160 12 C -0.135 4.135 13 N -0.481 5.481 14 C 0.130 3.870 15 C -0.170 4.170 16 C 0.066 3.934 17 F -0.222 7.222 18 H 0.302 0.698 19 H 0.114 0.886 20 H 0.102 0.898 21 H 0.125 0.875 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.810 -4.774 -2.656 8.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.174 4.174 3 Si 0.893 3.107 4 H -0.200 1.200 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.118 3.882 10 C -0.367 4.367 11 C -0.186 4.186 12 C -0.257 4.257 13 N -0.166 5.166 14 C 0.006 3.994 15 C -0.209 4.209 16 C 0.011 3.989 17 F -0.203 7.203 18 H 0.116 0.884 19 H 0.132 0.868 20 H 0.120 0.880 21 H 0.143 0.857 22 H 0.088 0.912 23 H 0.098 0.902 24 H 0.103 0.897 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.788 -3.305 -2.743 8.032 hybrid contribution 0.214 -1.874 0.059 1.887 sum 7.002 -5.179 -2.684 9.113 Atomic orbital electron populations 1.70373 1.08102 1.34655 1.30861 1.26675 0.95700 1.03257 0.91792 0.83602 0.75433 0.74154 0.77543 1.20011 1.20310 1.20597 1.19319 1.01455 0.92812 1.43777 0.91662 1.18192 0.93628 0.82081 0.94289 1.20752 1.07274 0.94947 1.13724 1.20291 0.99955 0.94508 1.03855 1.20919 0.99450 0.93604 1.11716 1.43982 1.24455 1.06327 1.41820 1.21107 0.84825 1.00234 0.93222 1.22606 0.94282 1.04299 0.99732 1.21920 0.80997 1.02663 0.93356 1.92746 1.50863 1.98146 1.78525 0.88375 0.86840 0.87982 0.85737 0.91208 0.90237 0.89728 0.90863 0.91040 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.83 12.63 55.56 0.70 -22.13 15 2 C 0.05 1.25 5.26 -17.27 -0.09 1.16 15 3 Si 1.07 22.52 29.99 -169.99 -5.10 17.42 15 4 H -0.28 -5.76 7.11 56.52 0.40 -5.36 15 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 6 H -0.28 -5.54 7.11 56.52 0.40 -5.13 15 7 C -0.54 -14.61 8.77 -38.25 -0.34 -14.94 15 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 15 9 C 0.23 6.21 6.31 -83.87 -0.53 5.68 15 10 C -0.34 -9.57 8.86 -38.62 -0.34 -9.91 15 11 C -0.16 -4.00 10.80 -40.00 -0.43 -4.44 15 12 C -0.13 -3.14 11.41 -16.44 -0.19 -3.33 15 13 N -0.48 -11.39 2.79 -114.07 -0.32 -11.71 15 14 C 0.13 2.37 5.79 -4.04 -0.02 2.35 15 15 C -0.17 -2.82 5.99 -26.73 -0.16 -2.98 15 16 C 0.07 0.86 7.55 37.16 0.28 1.14 15 17 F -0.22 -3.39 17.36 2.25 0.04 -3.35 15 18 H 0.30 8.76 6.29 -40.82 -0.26 8.50 15 19 H 0.11 3.27 6.93 -52.49 -0.36 2.91 15 20 H 0.10 2.28 8.06 -52.49 -0.42 1.85 15 21 H 0.12 2.49 8.06 -52.49 -0.42 2.06 15 22 H 0.07 1.08 8.13 -51.93 -0.42 0.65 15 23 H 0.08 1.45 7.88 -51.93 -0.41 1.04 15 24 H 0.08 1.61 8.14 -51.93 -0.42 1.19 15 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.07 0.76 8.14 -51.92 -0.42 0.33 15 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 15 LS Contribution 240.56 15.07 3.63 3.63 Total: -1.00 -30.05 240.56 -6.06 -36.12 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.19 Total: 5.30 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -1.82 Total: -25.27 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.38 Total: -33.84 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.04 Total: -3.35 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.10 Total: 17.42 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.05 -6.06 -36.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212246526.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.762 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds