Wall clock time and date at job start Mon Mar 30 2020 01:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30866 * 1 3 3 Si 1.86796 * 120.00139 * 2 1 4 4 H 1.48504 * 109.47129 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47049 * 120.00493 * 3 2 1 6 6 H 1.48499 * 109.47335 * 240.00529 * 3 2 1 7 7 C 1.40073 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99845 * 156.71187 * 7 2 1 9 9 C 1.39947 * 119.99905 * 336.70657 * 7 2 1 10 10 C 1.39745 * 126.35407 * 340.26769 * 9 7 2 11 11 C 1.39307 * 107.05118 * 179.84483 * 10 9 7 12 12 C 1.35972 * 108.09070 * 0.41860 * 11 10 9 13 13 N 1.36168 * 109.04988 * 359.73742 * 12 11 10 14 14 C 1.46500 * 125.74166 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47036 * 265.02183 * 14 13 12 16 16 C 1.52999 * 109.47437 * 180.02562 * 15 14 13 17 17 F 1.39896 * 109.47503 * 180.02562 * 16 15 14 18 18 H 0.97003 * 119.99983 * 173.97401 * 1 2 3 19 19 H 1.07996 * 126.47788 * 359.97438 * 10 9 7 20 20 H 1.08000 * 125.95718 * 180.13250 * 11 10 9 21 21 H 1.07996 * 125.47800 * 179.77642 * 12 11 10 22 22 H 1.08999 * 109.47459 * 25.02399 * 14 13 12 23 23 H 1.09002 * 109.46995 * 145.02553 * 14 13 12 24 24 H 1.08999 * 109.47173 * 300.00391 * 15 14 13 25 25 H 1.09002 * 109.46927 * 60.00328 * 15 14 13 26 26 H 1.09008 * 109.47105 * 300.00089 * 16 15 14 27 27 H 1.08996 * 109.47162 * 59.99824 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 1.2777 2.7465 0.0006 5 1 3.0965 1.6963 1.2125 6 1 3.0963 1.6964 -1.2125 7 6 2.0090 -1.2131 -0.0005 8 1 3.0230 -1.2510 -0.3703 9 6 1.3947 -2.3759 0.4782 10 6 0.2813 -2.4379 1.3203 11 6 0.0089 -3.7865 1.5386 12 6 0.9316 -4.5190 0.8597 13 7 1.7799 -3.6740 0.2110 14 6 2.9112 -4.0754 -0.6287 15 6 4.1924 -4.0756 0.2077 16 6 5.3741 -4.4941 -0.6693 17 9 6.5454 -4.4948 0.0956 18 1 -0.4850 -0.8354 -0.0882 19 1 -0.2661 -1.5989 1.7239 20 1 -0.7925 -4.1815 2.1454 21 1 0.9832 -5.5975 0.8379 22 1 2.7344 -5.0762 -1.0226 23 1 3.0172 -3.3730 -1.4555 24 1 4.3692 -3.0747 0.6016 25 1 4.0864 -4.7779 1.0345 26 1 5.1974 -5.4949 -1.0636 27 1 5.4799 -3.7915 -1.4959 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000212246526.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:23 Heat of formation + Delta-G solvation = -47.297613 kcal Electronic energy + Delta-G solvation = -12220.381873 eV Core-core repulsion = 9891.688099 eV Total energy + Delta-G solvation = -2328.693774 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.61926 -41.23959 -35.90625 -35.26299 -31.31336 -29.95104 -26.35585 -26.14196 -22.98715 -21.27025 -20.80632 -19.21487 -17.30945 -17.21755 -16.59642 -15.97134 -15.76419 -15.18611 -14.97125 -14.60680 -14.11767 -13.76761 -12.98601 -12.89801 -12.51993 -12.41675 -12.23490 -12.09226 -11.92724 -11.61567 -11.45508 -10.85973 -9.29895 -8.96781 -8.91703 -6.22710 1.41334 1.53184 1.81089 1.90964 2.34419 2.46522 2.56782 3.25235 3.71472 3.73648 3.91016 4.16192 4.18319 4.41943 4.58647 4.75310 4.77154 4.94676 5.11595 5.14419 5.53401 5.64734 5.86587 5.96581 6.27352 6.59543 6.88021 7.15058 7.36805 8.24091 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.027105 B = 0.012743 C = 0.009108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.774188 B = 2196.805762 C = 3073.580181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.005 3.995 3 Si 1.120 2.880 4 H -0.275 1.275 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.561 4.561 8 H 0.071 0.929 9 C 0.196 3.804 10 C -0.376 4.376 11 C -0.191 4.191 12 C -0.108 4.108 13 N -0.483 5.483 14 C 0.122 3.878 15 C -0.161 4.161 16 C 0.071 3.929 17 F -0.234 7.234 18 H 0.284 0.716 19 H 0.086 0.914 20 H 0.122 0.878 21 H 0.170 0.830 22 H 0.110 0.890 23 H 0.077 0.923 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.108 0.892 27 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.439 -6.082 -3.593 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.210 4.210 3 Si 0.938 3.062 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.596 4.596 8 H 0.089 0.911 9 C 0.086 3.914 10 C -0.399 4.399 11 C -0.216 4.216 12 C -0.231 4.231 13 N -0.167 5.167 14 C 0.000 4.000 15 C -0.200 4.200 16 C 0.016 3.984 17 F -0.216 7.216 18 H 0.096 0.904 19 H 0.104 0.896 20 H 0.140 0.860 21 H 0.187 0.813 22 H 0.128 0.872 23 H 0.096 0.904 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.445 -4.645 -3.700 10.323 hybrid contribution -0.314 -1.634 0.368 1.704 sum 8.131 -6.279 -3.331 10.800 Atomic orbital electron populations 1.70494 1.09097 1.33414 1.33663 1.28257 0.95706 1.06840 0.90205 0.82974 0.74548 0.69861 0.78862 1.19975 1.19429 1.17810 1.19574 1.01801 0.93530 1.44651 0.91059 1.18393 0.94210 0.83874 0.94968 1.20793 1.08312 0.95708 1.15047 1.20590 1.01818 0.93539 1.05676 1.21610 0.97495 0.95438 1.08604 1.44308 1.25590 1.05184 1.41599 1.21477 0.83720 1.02196 0.92585 1.22457 0.95121 1.02386 1.00026 1.22007 0.78768 1.05173 0.92431 1.92724 1.51492 1.98300 1.79047 0.90392 0.89608 0.86004 0.81314 0.87169 0.90432 0.93092 0.91229 0.87391 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -48.93 12.63 21.86 0.28 -48.65 15 2 C 0.00 0.25 5.26 85.28 0.45 0.70 15 3 Si 1.12 45.37 29.99 68.60 2.06 47.43 15 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 15 6 H -0.25 -9.16 7.11 99.48 0.71 -8.45 15 7 C -0.56 -30.91 8.77 23.13 0.20 -30.71 15 8 H 0.07 3.70 7.81 -2.91 -0.02 3.67 15 9 C 0.20 10.88 6.31 38.95 0.25 11.12 15 10 C -0.38 -21.56 8.86 22.89 0.20 -21.36 15 11 C -0.19 -9.47 10.80 22.00 0.24 -9.24 15 12 C -0.11 -4.77 11.41 83.49 0.95 -3.82 15 13 N -0.48 -22.20 2.79 -514.81 -1.44 -23.63 15 14 C 0.12 4.11 5.79 86.38 0.50 4.62 15 15 C -0.16 -4.96 5.99 30.59 0.18 -4.78 15 16 C 0.07 1.60 7.55 71.98 0.54 2.15 15 17 F -0.23 -6.56 17.36 44.97 0.78 -5.78 15 18 H 0.28 17.34 6.29 -92.71 -0.58 16.75 15 19 H 0.09 5.27 6.93 -2.91 -0.02 5.25 15 20 H 0.12 5.36 8.06 -2.91 -0.02 5.34 15 21 H 0.17 5.90 8.06 -2.91 -0.02 5.88 15 22 H 0.11 2.85 8.13 -2.39 -0.02 2.83 15 23 H 0.08 2.66 7.88 -2.39 -0.02 2.64 15 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 25 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.11 1.72 8.14 -2.38 -0.02 1.70 15 27 H 0.09 1.81 8.14 -2.39 -0.02 1.79 15 Total: -1.00 -67.10 240.56 6.53 -60.57 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 1.33 Total: 21.38 kcal Atomic # 6 Polarization: -54.83 SS G_CDS: 3.52 Total: -51.31 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.16 Total: -72.28 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.78 Total: -5.78 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.06 Total: 47.43 kcal Total: -67.10 6.53 -60.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212246526.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.273 kcal (2) G-P(sol) polarization free energy of solvation -67.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds