Wall clock time and date at job start Mon Mar 30 2020 02:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37099 * 119.99984 * 2 1 4 4 H 1.07994 * 119.99749 * 205.15345 * 3 2 1 5 5 C 1.38949 * 119.99734 * 25.14803 * 3 2 1 6 6 N 1.31415 * 120.00462 * 11.74782 * 5 3 2 7 7 Si 1.86807 * 119.99852 * 191.74457 * 5 3 2 8 8 H 1.48499 * 109.47107 * 60.00051 * 7 5 3 9 9 H 1.48500 * 109.47183 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46801 * 300.00056 * 7 5 3 11 11 C 1.34775 * 120.00034 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99887 * 179.97438 * 11 2 1 13 13 C 1.50697 * 119.99711 * 359.72398 * 11 2 1 14 14 H 1.08998 * 115.55474 * 34.68970 * 13 11 2 15 15 C 1.53006 * 117.49788 * 249.02072 * 13 11 2 16 16 C 1.53001 * 117.49891 * 180.36378 * 13 11 2 17 17 C 1.52994 * 117.50102 * 214.97943 * 16 13 11 18 18 C 1.53005 * 117.49713 * 359.97217 * 16 13 11 19 19 H 1.09000 * 109.46638 * 265.06523 * 1 2 3 20 20 H 1.09004 * 109.47158 * 25.05891 * 1 2 3 21 21 H 1.08993 * 109.47133 * 145.06334 * 1 2 3 22 22 H 0.96998 * 119.99786 * 179.97438 * 6 5 3 23 23 H 1.09000 * 117.49530 * 0.02562 * 15 13 11 24 24 H 1.08999 * 117.49713 * 145.02011 * 15 13 11 25 25 H 1.09003 * 109.47699 * 59.99640 * 17 16 13 26 26 H 1.09003 * 109.47616 * 179.97438 * 17 16 13 27 27 H 1.09002 * 109.47211 * 300.00010 * 17 16 13 28 28 H 1.09007 * 109.46851 * 60.00328 * 18 16 13 29 29 H 1.08997 * 109.47252 * 180.02562 * 18 16 13 30 30 H 1.09001 * 109.47202 * 300.00442 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1537 1.2316 -0.3975 5 6 1.5545 2.3336 0.5114 6 7 0.4387 2.2429 1.1997 7 14 2.3394 4.0036 0.2205 8 1 2.4234 4.2636 -1.2391 9 1 1.5147 5.0572 0.8648 10 1 3.7044 4.0176 0.8052 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4722 0.0052 14 1 0.4478 -2.4762 -0.5506 15 6 1.4583 -3.3245 1.2738 16 6 2.2075 -3.7626 0.0129 17 6 1.6503 -4.9598 -0.7597 18 6 3.7317 -3.6292 0.0136 19 1 -0.3632 -0.0884 1.0239 20 1 -0.3634 0.9310 -0.4353 21 1 -0.3633 -0.8424 -0.5885 22 1 0.0230 3.0431 1.5570 23 1 2.0509 -2.9410 2.1044 24 1 0.5687 -3.8894 1.5524 25 1 1.5405 -4.6946 -1.8112 26 1 2.3355 -5.8026 -0.6676 27 1 0.6780 -5.2353 -0.3511 28 1 4.0480 -3.0809 0.9010 29 1 4.1833 -4.6212 0.0189 30 1 4.0497 -3.0904 -0.8790 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228662771.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:14 Heat of formation + Delta-G solvation = -8.583838 kcal Electronic energy + Delta-G solvation = -12851.151821 eV Core-core repulsion = 10647.597107 eV Total energy + Delta-G solvation = -2203.554713 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.15165 -36.56656 -34.41150 -31.56376 -28.96040 -26.98684 -26.33918 -24.75008 -22.59977 -19.46257 -17.76153 -16.81674 -16.18808 -14.66918 -14.17814 -14.08282 -13.45920 -13.33153 -13.12483 -12.38125 -11.99429 -11.65896 -11.59054 -11.37719 -11.18931 -11.08129 -10.79230 -10.73475 -10.35004 -10.25137 -9.56221 -9.17004 -8.93356 -8.11565 -7.57176 -6.26981 -3.83527 3.20885 3.26479 3.30617 3.72285 4.14666 4.42741 4.83396 5.14384 5.21798 5.38684 5.53900 5.58940 5.91831 5.96988 6.00065 6.16805 6.21865 6.42486 6.46034 6.52451 6.58350 6.68863 6.93153 7.11731 7.26332 7.60644 8.21804 8.56405 9.25522 9.49960 10.09128 10.78021 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064162 B = 0.009769 C = 0.008963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.288341 B = 2865.575051 C = 3123.116362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.446 5.446 3 C -0.305 4.305 4 H 0.096 0.904 5 C 0.029 3.971 6 N -0.884 5.884 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.477 3.523 12 O -0.583 6.583 13 C -0.165 4.165 14 H 0.108 0.892 15 C -0.153 4.153 16 C -0.109 4.109 17 C -0.111 4.111 18 C -0.093 4.093 19 H 0.050 0.950 20 H 0.072 0.928 21 H 0.024 0.976 22 H 0.267 0.733 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.891 -8.246 -1.859 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.164 5.164 3 C -0.433 4.433 4 H 0.114 0.886 5 C -0.174 4.174 6 N -0.523 5.523 7 Si 0.753 3.247 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.265 3.735 12 O -0.468 6.468 13 C -0.187 4.187 14 H 0.126 0.874 15 C -0.191 4.191 16 C -0.110 4.110 17 C -0.168 4.168 18 C -0.150 4.150 19 H 0.068 0.932 20 H 0.091 0.909 21 H 0.043 0.957 22 H 0.077 0.923 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.447 -8.061 -1.765 8.378 hybrid contribution -0.080 1.012 0.007 1.015 sum -1.527 -7.049 -1.759 7.424 Atomic orbital electron populations 1.21452 0.81398 0.99685 1.00357 1.43512 1.05416 1.04608 1.62843 1.19584 1.00942 0.84413 1.38377 0.88624 1.25350 0.96666 1.00099 0.95237 1.69989 1.19237 1.29705 1.33396 0.86005 0.79051 0.81046 0.78612 1.19963 1.20970 1.19833 1.19210 0.87410 0.83830 0.83075 1.90493 1.13754 1.86807 1.55785 1.22362 1.01183 0.91924 1.03199 0.87396 1.23098 1.02091 1.02297 0.91575 1.21506 0.95376 0.94210 0.99906 1.21342 1.00046 0.95889 0.99552 1.21247 0.90917 0.98822 1.04043 0.93191 0.90889 0.95713 0.92290 0.88774 0.89009 0.92443 0.92312 0.92787 0.91699 0.94624 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.67 8.45 59.85 0.51 3.18 16 2 N -0.45 -11.86 3.01 -122.19 -0.37 -12.23 16 3 C -0.31 -8.75 9.23 -14.93 -0.14 -8.88 16 4 H 0.10 2.85 7.46 -52.49 -0.39 2.46 16 5 C 0.03 0.79 5.06 -17.47 -0.09 0.71 16 6 N -0.88 -24.19 10.83 55.50 0.60 -23.59 16 7 Si 0.93 21.19 29.57 -169.99 -5.03 16.17 16 8 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 C 0.48 12.03 7.39 -10.99 -0.08 11.95 16 12 O -0.58 -16.20 12.82 5.55 0.07 -16.13 16 13 C -0.17 -3.26 5.01 -91.77 -0.46 -3.72 16 14 H 0.11 1.94 6.52 -51.93 -0.34 1.60 16 15 C -0.15 -2.63 9.53 -26.69 -0.25 -2.89 16 16 C -0.11 -1.87 2.70 -154.47 -0.42 -2.29 16 17 C -0.11 -1.47 9.85 37.15 0.37 -1.11 16 18 C -0.09 -1.70 8.09 37.16 0.30 -1.40 16 19 H 0.05 1.19 7.85 -51.93 -0.41 0.78 16 20 H 0.07 1.78 6.78 -51.93 -0.35 1.43 16 21 H 0.02 0.48 6.23 -51.93 -0.32 0.16 16 22 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 23 H 0.09 1.75 8.05 -51.93 -0.42 1.33 16 24 H 0.09 1.32 8.05 -51.93 -0.42 0.90 16 25 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.69 7.92 -51.93 -0.41 0.28 16 27 H 0.05 0.63 7.90 -51.93 -0.41 0.22 16 28 H 0.06 1.32 7.02 -51.93 -0.36 0.95 16 29 H 0.03 0.53 7.92 -51.93 -0.41 0.12 16 30 H 0.07 1.33 7.26 -51.93 -0.38 0.96 16 LS Contribution 248.28 15.07 3.74 3.74 Total: -1.00 -30.57 248.28 -5.43 -36.00 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.18 Total: 0.49 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -0.27 Total: -4.45 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: 0.23 Total: -35.82 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: 0.07 Total: -16.13 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.57 -5.43 -36.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228662771.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.412 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds