Wall clock time and date at job start Mon Mar 30 2020 02:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.37099 * 119.99984 * 2 1 4 4 H 1.07994 * 119.99749 * 205.15345 * 3 2 1 5 5 C 1.38949 * 119.99734 * 25.14803 * 3 2 1 6 6 N 1.31415 * 120.00462 * 11.74782 * 5 3 2 7 7 Si 1.86807 * 119.99852 * 191.74457 * 5 3 2 8 8 H 1.48499 * 109.47107 * 60.00051 * 7 5 3 9 9 H 1.48500 * 109.47183 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46801 * 300.00056 * 7 5 3 11 11 C 1.34775 * 120.00034 * 180.02562 * 2 1 3 12 12 O 1.21288 * 119.99887 * 179.97438 * 11 2 1 13 13 C 1.50697 * 119.99711 * 359.72398 * 11 2 1 14 14 H 1.08998 * 115.55474 * 34.68970 * 13 11 2 15 15 C 1.53006 * 117.49788 * 249.02072 * 13 11 2 16 16 C 1.53001 * 117.49891 * 180.36378 * 13 11 2 17 17 C 1.52994 * 117.50102 * 214.97943 * 16 13 11 18 18 C 1.53005 * 117.49713 * 359.97217 * 16 13 11 19 19 H 1.09000 * 109.46638 * 265.06523 * 1 2 3 20 20 H 1.09004 * 109.47158 * 25.05891 * 1 2 3 21 21 H 1.08993 * 109.47133 * 145.06334 * 1 2 3 22 22 H 0.96998 * 119.99786 * 179.97438 * 6 5 3 23 23 H 1.09000 * 117.49530 * 0.02562 * 15 13 11 24 24 H 1.08999 * 117.49713 * 145.02011 * 15 13 11 25 25 H 1.09003 * 109.47699 * 59.99640 * 17 16 13 26 26 H 1.09003 * 109.47616 * 179.97438 * 17 16 13 27 27 H 1.09002 * 109.47211 * 300.00010 * 17 16 13 28 28 H 1.09007 * 109.46851 * 60.00328 * 18 16 13 29 29 H 1.08997 * 109.47252 * 180.02562 * 18 16 13 30 30 H 1.09001 * 109.47202 * 300.00442 * 18 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1506 1.1873 0.0000 4 1 3.1537 1.2316 -0.3975 5 6 1.5545 2.3336 0.5114 6 7 0.4387 2.2429 1.1997 7 14 2.3394 4.0036 0.2205 8 1 2.4234 4.2636 -1.2391 9 1 1.5147 5.0572 0.8648 10 1 3.7044 4.0176 0.8052 11 6 2.1389 -1.1672 -0.0005 12 8 3.3518 -1.1672 -0.0010 13 6 1.3854 -2.4722 0.0052 14 1 0.4478 -2.4762 -0.5506 15 6 1.4583 -3.3245 1.2738 16 6 2.2075 -3.7626 0.0129 17 6 1.6503 -4.9598 -0.7597 18 6 3.7317 -3.6292 0.0136 19 1 -0.3632 -0.0884 1.0239 20 1 -0.3634 0.9310 -0.4353 21 1 -0.3633 -0.8424 -0.5885 22 1 0.0230 3.0431 1.5570 23 1 2.0509 -2.9410 2.1044 24 1 0.5687 -3.8894 1.5524 25 1 1.5405 -4.6946 -1.8112 26 1 2.3355 -5.8026 -0.6676 27 1 0.6780 -5.2353 -0.3511 28 1 4.0480 -3.0809 0.9010 29 1 4.1833 -4.6212 0.0189 30 1 4.0497 -3.0904 -0.8790 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228662771.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:14 Heat of formation + Delta-G solvation = -27.595710 kcal Electronic energy + Delta-G solvation = -12851.976237 eV Core-core repulsion = 10647.597107 eV Total energy + Delta-G solvation = -2204.379130 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.89415 -38.24494 -36.42746 -33.64053 -30.34244 -28.37784 -28.17832 -26.66248 -24.32490 -21.04677 -19.37840 -18.87976 -18.02808 -16.60107 -16.01622 -15.85423 -15.08018 -14.84617 -14.47804 -14.00839 -13.53965 -13.43452 -13.32482 -13.08004 -12.77840 -12.65330 -12.63295 -12.28474 -12.15323 -12.01439 -11.08073 -10.93018 -10.58544 -10.05637 -9.63243 -8.34195 -5.99931 1.37265 1.38464 1.49651 1.93818 2.26328 2.82413 3.04398 3.20115 3.81313 3.93921 4.04353 4.25974 4.30993 4.68166 4.75702 4.86736 4.89147 4.99407 5.06930 5.14043 5.16156 5.18718 5.35129 5.37690 5.42775 5.66463 6.11516 6.50823 7.17737 7.49196 8.08251 8.69015 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.064162 B = 0.009769 C = 0.008963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.288341 B = 2865.575051 C = 3123.116362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.465 5.465 3 C -0.345 4.345 4 H 0.069 0.931 5 C -0.005 4.005 6 N -0.899 5.899 7 Si 0.990 3.010 8 H -0.266 1.266 9 H -0.268 1.268 10 H -0.278 1.278 11 C 0.464 3.536 12 O -0.622 6.622 13 C -0.187 4.187 14 H 0.132 0.868 15 C -0.139 4.139 16 C -0.100 4.100 17 C -0.105 4.105 18 C -0.091 4.091 19 H 0.039 0.961 20 H 0.055 0.945 21 H 0.064 0.936 22 H 0.273 0.727 23 H 0.071 0.929 24 H 0.132 0.868 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 -9.494 -2.068 10.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.017 4.017 2 N -0.184 5.184 3 C -0.473 4.473 4 H 0.087 0.913 5 C -0.206 4.206 6 N -0.537 5.537 7 Si 0.813 3.187 8 H -0.191 1.191 9 H -0.193 1.193 10 H -0.203 1.203 11 C 0.254 3.746 12 O -0.509 6.509 13 C -0.208 4.208 14 H 0.149 0.851 15 C -0.177 4.177 16 C -0.100 4.100 17 C -0.162 4.162 18 C -0.148 4.148 19 H 0.058 0.942 20 H 0.074 0.926 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.150 0.850 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.701 -9.321 -1.974 9.903 hybrid contribution 0.348 1.367 0.102 1.414 sum -2.353 -7.955 -1.871 8.504 Atomic orbital electron populations 1.21378 0.79615 1.00462 1.00245 1.43811 1.06688 1.04606 1.63294 1.19563 1.00799 0.86454 1.40519 0.91325 1.26125 0.97112 1.03038 0.94335 1.70061 1.19740 1.30894 1.33026 0.85056 0.77950 0.76775 0.78885 1.19128 1.19261 1.20318 1.20236 0.87476 0.85441 0.81450 1.90462 1.15712 1.87747 1.57028 1.22298 1.02271 0.89917 1.06269 0.85056 1.23210 1.03210 1.01051 0.90224 1.21738 0.94220 0.94070 1.00009 1.21365 1.01468 0.94264 0.99094 1.21171 0.92644 0.99885 1.01147 0.94204 0.92565 0.91752 0.91717 0.91034 0.84962 0.92076 0.90391 0.90481 0.94904 0.91075 0.94241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.83 8.45 127.77 1.08 6.91 16 2 N -0.47 -25.33 3.01 -658.90 -1.98 -27.31 16 3 C -0.35 -20.48 9.23 84.04 0.78 -19.70 16 4 H 0.07 4.32 7.46 -2.91 -0.02 4.30 16 5 C 0.00 -0.26 5.06 84.93 0.43 0.17 16 6 N -0.90 -49.27 10.83 21.66 0.23 -49.04 16 7 Si 0.99 43.74 29.57 68.60 2.03 45.77 16 8 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 9 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 C 0.46 23.92 7.39 87.66 0.65 24.57 16 12 O -0.62 -36.14 12.82 -3.05 -0.04 -36.18 16 13 C -0.19 -7.08 5.01 -11.54 -0.06 -7.14 16 14 H 0.13 4.31 6.52 -2.39 -0.02 4.30 16 15 C -0.14 -4.48 9.53 30.62 0.29 -4.19 16 16 C -0.10 -3.18 2.70 -52.16 -0.14 -3.32 16 17 C -0.11 -2.32 9.85 71.98 0.71 -1.61 16 18 C -0.09 -3.29 8.09 71.98 0.58 -2.71 16 19 H 0.04 1.88 7.85 -2.39 -0.02 1.87 16 20 H 0.06 2.74 6.78 -2.39 -0.02 2.72 16 21 H 0.06 2.40 6.23 -2.39 -0.01 2.39 16 22 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 23 H 0.07 2.62 8.05 -2.39 -0.02 2.60 16 24 H 0.13 3.19 8.05 -2.39 -0.02 3.17 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.45 7.92 -2.39 -0.02 1.43 16 27 H 0.08 1.38 7.90 -2.39 -0.02 1.37 16 28 H 0.03 1.36 7.02 -2.38 -0.02 1.34 16 29 H 0.07 2.01 7.92 -2.39 -0.02 1.99 16 30 H 0.04 1.61 7.26 -2.39 -0.02 1.59 16 Total: -1.00 -68.59 248.28 5.67 -62.92 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.11 Total: 10.86 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.32 Total: -7.02 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -1.75 Total: -76.35 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.04 Total: -36.18 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -68.59 5.67 -62.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228662771.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.320 kcal (2) G-P(sol) polarization free energy of solvation -68.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds