Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 N 1.46500 * 112.90919 * 312.60878 * 3 2 1 5 5 C 1.34775 * 120.00112 * 290.63920 * 4 3 2 6 6 O 1.21695 * 119.99691 * 5.04721 * 5 4 3 7 7 C 1.46371 * 120.00017 * 185.04794 * 5 4 3 8 8 H 1.07997 * 119.99803 * 359.97438 * 7 5 4 9 9 C 1.40047 * 119.99936 * 180.02562 * 7 5 4 10 10 N 1.30676 * 120.00156 * 0.02562 * 9 7 5 11 11 Si 1.86807 * 119.99952 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47073 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46676 * 119.99962 * 11 9 7 14 14 H 1.48493 * 109.47160 * 240.00253 * 11 9 7 15 15 C 1.53783 * 113.61398 * 181.35583 * 3 2 1 16 16 C 1.53774 * 87.08352 * 220.02295 * 15 3 2 17 17 C 1.53779 * 113.61045 * 83.86437 * 3 2 1 18 18 H 1.08997 * 109.47359 * 65.41950 * 1 2 3 19 19 H 1.09001 * 109.46947 * 185.41806 * 1 2 3 20 20 H 1.09000 * 109.47195 * 305.41905 * 1 2 3 21 21 H 1.09006 * 109.47148 * 240.00428 * 2 1 3 22 22 H 1.08999 * 109.47399 * 120.00614 * 2 1 3 23 23 H 0.96997 * 119.99645 * 110.64198 * 4 3 2 24 24 H 0.96993 * 119.99953 * 180.02562 * 10 9 7 25 25 H 1.08994 * 113.61471 * 105.47008 * 15 3 2 26 26 H 1.09000 * 113.61432 * 334.57335 * 15 3 2 27 27 H 1.09001 * 113.61784 * 139.98101 * 16 15 3 28 28 H 1.09001 * 113.61832 * 270.88790 * 16 15 3 29 29 H 1.09001 * 113.62074 * 25.43042 * 17 3 2 30 30 H 1.08999 * 113.68898 * 254.54001 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.3687 2.2847 -0.9932 5 6 1.5893 2.0830 -2.3074 6 8 2.2727 1.1446 -2.6726 7 6 1.0070 2.9926 -3.2953 8 1 0.4002 3.8251 -2.9711 9 6 1.2358 2.7827 -4.6609 10 7 1.9688 1.7744 -5.0532 11 14 0.4921 3.9431 -5.9218 12 1 -0.2905 4.9954 -5.2250 13 1 1.5778 4.5763 -6.7127 14 1 -0.4018 3.1805 -6.8298 15 6 3.5734 1.5537 -0.0333 16 6 3.4325 2.7132 0.9669 17 6 2.1032 2.0734 1.4010 18 1 -0.3634 0.4275 -0.9345 19 1 -0.3633 -1.0231 0.0970 20 1 -0.3633 0.5956 0.8375 21 1 1.8933 -0.5138 -0.8901 22 1 1.8933 -0.5139 0.8899 23 1 0.7655 2.9875 -0.7049 24 1 2.1276 1.6293 -5.9990 25 1 3.9681 1.8586 -1.0025 26 1 4.0834 0.6824 0.3773 27 1 4.1934 2.7115 1.7474 28 1 3.3138 3.6873 0.4923 29 1 2.2114 1.3441 2.2039 30 1 1.3115 2.7979 1.5912 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229498373.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -31.628765 kcal Electronic energy + Delta-G solvation = -13012.559740 eV Core-core repulsion = 10808.005723 eV Total energy + Delta-G solvation = -2204.554016 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.30063 -36.06282 -32.56592 -32.02656 -30.88089 -26.31373 -25.21957 -24.51861 -21.16047 -20.19324 -17.83130 -17.10871 -15.25414 -15.04034 -14.74536 -14.04361 -13.53072 -13.22508 -12.52785 -12.19997 -11.94332 -11.75350 -11.45576 -11.11192 -10.98557 -10.69988 -10.48988 -10.37256 -10.22085 -10.12173 -9.69098 -9.49611 -8.81364 -7.46984 -7.36420 -6.13688 -4.59176 3.14472 3.22862 3.27023 4.13105 4.63465 4.82063 5.11808 5.16284 5.42916 5.47720 5.83245 5.91387 5.99090 6.05879 6.13264 6.17949 6.24570 6.44613 6.55828 6.73628 6.78262 6.93046 6.98971 7.10868 7.47366 7.99017 8.24226 8.41004 9.07307 9.63765 10.65700 10.86977 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048786 B = 0.010648 C = 0.010142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.803182 B = 2628.966084 C = 2760.048148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.119 4.119 3 C 0.173 3.827 4 N -0.745 5.745 5 C 0.559 3.441 6 O -0.573 6.573 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.089 3.911 10 N -0.768 5.768 11 Si 0.904 3.096 12 H -0.265 1.265 13 H -0.277 1.277 14 H -0.277 1.277 15 C -0.140 4.140 16 C -0.138 4.138 17 C -0.143 4.143 18 H 0.061 0.939 19 H 0.039 0.961 20 H 0.042 0.958 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.379 0.621 24 H 0.266 0.734 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.157 1.212 9.020 9.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.158 4.158 3 C 0.085 3.915 4 N -0.399 5.399 5 C 0.363 3.637 6 O -0.455 6.455 7 C -0.584 4.584 8 H 0.084 0.916 9 C -0.131 4.131 10 N -0.397 5.397 11 Si 0.729 3.271 12 H -0.189 1.189 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.179 4.179 16 C -0.176 4.176 17 C -0.181 4.181 18 H 0.080 0.920 19 H 0.058 0.942 20 H 0.061 0.939 21 H 0.094 0.906 22 H 0.068 0.932 23 H 0.211 0.789 24 H 0.077 0.923 25 H 0.096 0.904 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.552 0.421 8.582 8.610 hybrid contribution -0.664 0.935 -0.498 1.250 sum -1.216 1.356 8.084 8.287 Atomic orbital electron populations 1.21581 0.96317 0.99818 1.01842 1.21730 0.95908 0.96742 1.01428 1.20780 0.92276 0.90497 0.87950 1.45886 1.50677 1.37483 1.05886 1.18119 0.80759 0.85266 0.79548 1.90586 1.42762 1.33037 1.79084 1.20933 1.34071 1.12966 0.90457 0.91636 1.25673 0.93573 0.94769 0.99045 1.70029 1.29040 1.24846 1.15818 0.86377 0.79310 0.80778 0.80640 1.18857 1.20250 1.20244 1.23155 0.97356 0.97365 1.00027 1.22774 0.96973 0.98944 0.98871 1.23240 0.97955 0.99936 0.96940 0.91994 0.94173 0.93896 0.90624 0.93161 0.78941 0.92302 0.90360 0.90923 0.92462 0.90379 0.90111 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.53 37.16 0.35 -2.09 16 2 C -0.12 -2.26 5.26 -26.73 -0.14 -2.40 16 3 C 0.17 3.34 0.61 -131.01 -0.08 3.26 16 4 N -0.74 -16.50 4.22 -48.24 -0.20 -16.71 16 5 C 0.56 15.60 7.23 -12.99 -0.09 15.50 16 6 O -0.57 -17.95 13.10 5.19 0.07 -17.88 16 7 C -0.55 -15.43 9.54 -35.63 -0.34 -15.77 16 8 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 9 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 10 N -0.77 -23.04 11.83 55.55 0.66 -22.38 16 11 Si 0.90 20.30 29.56 -169.99 -5.02 15.27 16 12 H -0.26 -5.75 7.11 56.52 0.40 -5.34 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 15 C -0.14 -2.70 6.96 -25.92 -0.18 -2.88 16 16 C -0.14 -2.19 7.99 -25.92 -0.21 -2.40 16 17 C -0.14 -2.17 7.37 -25.92 -0.19 -2.36 16 18 H 0.06 1.27 7.72 -51.93 -0.40 0.87 16 19 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 21 H 0.08 1.71 7.30 -51.93 -0.38 1.33 16 22 H 0.05 0.81 7.92 -51.93 -0.41 0.40 16 23 H 0.38 7.58 8.67 -40.82 -0.35 7.22 16 24 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 25 H 0.08 1.82 7.22 -51.93 -0.37 1.44 16 26 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 30 H 0.06 0.90 8.10 -51.93 -0.42 0.47 16 LS Contribution 251.70 15.07 3.79 3.79 Total: -1.00 -32.16 251.70 -6.09 -38.26 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.41 Total: 6.39 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.97 Total: -6.74 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: 0.45 Total: -39.09 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.07 Total: -17.88 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.16 -6.09 -38.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229498373.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.628 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds