Wall clock time and date at job start Mon Mar 30 2020 02:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 N 1.46500 * 112.90919 * 312.60878 * 3 2 1 5 5 C 1.34775 * 120.00112 * 290.63920 * 4 3 2 6 6 O 1.21695 * 119.99691 * 5.04721 * 5 4 3 7 7 C 1.46371 * 120.00017 * 185.04794 * 5 4 3 8 8 H 1.07997 * 119.99803 * 359.97438 * 7 5 4 9 9 C 1.40047 * 119.99936 * 180.02562 * 7 5 4 10 10 N 1.30676 * 120.00156 * 0.02562 * 9 7 5 11 11 Si 1.86807 * 119.99952 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47073 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.46676 * 119.99962 * 11 9 7 14 14 H 1.48493 * 109.47160 * 240.00253 * 11 9 7 15 15 C 1.53783 * 113.61398 * 181.35583 * 3 2 1 16 16 C 1.53774 * 87.08352 * 220.02295 * 15 3 2 17 17 C 1.53779 * 113.61045 * 83.86437 * 3 2 1 18 18 H 1.08997 * 109.47359 * 65.41950 * 1 2 3 19 19 H 1.09001 * 109.46947 * 185.41806 * 1 2 3 20 20 H 1.09000 * 109.47195 * 305.41905 * 1 2 3 21 21 H 1.09006 * 109.47148 * 240.00428 * 2 1 3 22 22 H 1.08999 * 109.47399 * 120.00614 * 2 1 3 23 23 H 0.96997 * 119.99645 * 110.64198 * 4 3 2 24 24 H 0.96993 * 119.99953 * 180.02562 * 10 9 7 25 25 H 1.08994 * 113.61471 * 105.47008 * 15 3 2 26 26 H 1.09000 * 113.61432 * 334.57335 * 15 3 2 27 27 H 1.09001 * 113.61784 * 139.98101 * 16 15 3 28 28 H 1.09001 * 113.61832 * 270.88790 * 16 15 3 29 29 H 1.09001 * 113.62074 * 25.43042 * 17 3 2 30 30 H 1.08999 * 113.68898 * 254.54001 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.3687 2.2847 -0.9932 5 6 1.5893 2.0830 -2.3074 6 8 2.2727 1.1446 -2.6726 7 6 1.0070 2.9926 -3.2953 8 1 0.4002 3.8251 -2.9711 9 6 1.2358 2.7827 -4.6609 10 7 1.9688 1.7744 -5.0532 11 14 0.4921 3.9431 -5.9218 12 1 -0.2905 4.9954 -5.2250 13 1 1.5778 4.5763 -6.7127 14 1 -0.4018 3.1805 -6.8298 15 6 3.5734 1.5537 -0.0333 16 6 3.4325 2.7132 0.9669 17 6 2.1032 2.0734 1.4010 18 1 -0.3634 0.4275 -0.9345 19 1 -0.3633 -1.0231 0.0970 20 1 -0.3633 0.5956 0.8375 21 1 1.8933 -0.5138 -0.8901 22 1 1.8933 -0.5139 0.8899 23 1 0.7655 2.9875 -0.7049 24 1 2.1276 1.6293 -5.9990 25 1 3.9681 1.8586 -1.0025 26 1 4.0834 0.6824 0.3773 27 1 4.1934 2.7115 1.7474 28 1 3.3138 3.6873 0.4923 29 1 2.2114 1.3441 2.2039 30 1 1.3115 2.7979 1.5912 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229498373.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:14 Heat of formation + Delta-G solvation = -54.039597 kcal Electronic energy + Delta-G solvation = -13013.531546 eV Core-core repulsion = 10808.005723 eV Total energy + Delta-G solvation = -2205.525823 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.88768 -38.06589 -34.63141 -33.68540 -32.71476 -28.39130 -26.62342 -26.01650 -22.83569 -21.88127 -19.52595 -19.11558 -17.36716 -16.56310 -16.21135 -15.83771 -15.12243 -14.94639 -14.38833 -13.92919 -13.64782 -13.15974 -13.10766 -12.82542 -12.70226 -12.56038 -12.14879 -11.98486 -11.82869 -11.65939 -11.21782 -10.97328 -10.89677 -9.65690 -9.25099 -8.24567 -6.80696 1.38584 1.38667 1.55908 2.24719 2.53409 3.14379 3.65245 3.70648 3.86954 4.04983 4.11869 4.44364 4.52637 4.68169 4.83698 4.87794 4.98594 5.08286 5.13934 5.21538 5.31994 5.33890 5.43275 5.46596 5.63119 5.93173 6.29902 6.51688 6.91190 7.67528 8.57877 8.76806 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.048786 B = 0.010648 C = 0.010142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.803182 B = 2628.966084 C = 2760.048148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.118 4.118 3 C 0.149 3.851 4 N -0.732 5.732 5 C 0.547 3.453 6 O -0.618 6.618 7 C -0.578 4.578 8 H 0.082 0.918 9 C 0.030 3.970 10 N -0.823 5.823 11 Si 0.993 3.007 12 H -0.248 1.248 13 H -0.270 1.270 14 H -0.270 1.270 15 C -0.152 4.152 16 C -0.126 4.126 17 C -0.116 4.116 18 H 0.022 0.978 19 H 0.056 0.944 20 H 0.071 0.929 21 H 0.024 0.976 22 H 0.087 0.913 23 H 0.391 0.609 24 H 0.272 0.728 25 H 0.023 0.977 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.233 2.466 10.926 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C 0.062 3.938 4 N -0.386 5.386 5 C 0.350 3.650 6 O -0.504 6.504 7 C -0.615 4.615 8 H 0.100 0.900 9 C -0.184 4.184 10 N -0.453 5.453 11 Si 0.812 3.188 12 H -0.171 1.171 13 H -0.195 1.195 14 H -0.195 1.195 15 C -0.190 4.190 16 C -0.164 4.164 17 C -0.154 4.154 18 H 0.041 0.959 19 H 0.075 0.925 20 H 0.090 0.910 21 H 0.043 0.957 22 H 0.105 0.895 23 H 0.224 0.776 24 H 0.081 0.919 25 H 0.042 0.958 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.132 0.868 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.646 1.695 10.546 10.808 hybrid contribution -0.289 0.487 -1.029 1.175 sum -1.935 2.182 9.517 9.954 Atomic orbital electron populations 1.21513 0.95267 1.01176 1.00883 1.21716 0.96838 0.96427 1.00678 1.21200 0.91916 0.90712 0.89983 1.45517 1.50353 1.37785 1.04930 1.18387 0.80255 0.84741 0.81574 1.90548 1.44618 1.34745 1.80496 1.21481 1.34710 1.13728 0.91569 0.90033 1.26888 0.93527 0.96506 1.01521 1.70199 1.30952 1.27417 1.16718 0.85049 0.78458 0.78187 0.77066 1.17117 1.19502 1.19460 1.23229 0.97437 0.99820 0.98557 1.22710 0.98597 0.96825 0.98233 1.23167 0.97618 1.00208 0.94371 0.95903 0.92488 0.90958 0.95691 0.89494 0.77588 0.91854 0.95827 0.89290 0.89266 0.91622 0.86845 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.53 71.98 0.69 -3.77 16 2 C -0.12 -4.39 5.26 30.59 0.16 -4.22 16 3 C 0.15 5.62 0.61 4.13 0.00 5.62 16 4 N -0.73 -32.75 4.22 -424.76 -1.79 -34.54 16 5 C 0.55 31.72 7.23 86.36 0.62 32.34 16 6 O -0.62 -41.06 13.10 -4.33 -0.06 -41.11 16 7 C -0.58 -33.30 9.54 24.83 0.24 -33.06 16 8 H 0.08 4.26 7.85 -2.91 -0.02 4.24 16 9 C 0.03 1.71 5.50 85.30 0.47 2.18 16 10 N -0.82 -51.31 11.83 21.84 0.26 -51.05 16 11 Si 0.99 41.99 29.56 68.60 2.03 44.01 16 12 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 13 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 14 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 15 C -0.15 -5.84 6.96 31.12 0.22 -5.62 16 16 C -0.13 -3.68 7.99 31.12 0.25 -3.43 16 17 C -0.12 -3.04 7.37 31.12 0.23 -2.81 16 18 H 0.02 0.92 7.72 -2.39 -0.02 0.90 16 19 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 20 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.02 1.16 7.30 -2.38 -0.02 1.14 16 22 H 0.09 2.56 7.92 -2.39 -0.02 2.54 16 23 H 0.39 15.35 8.67 -92.71 -0.80 14.55 16 24 H 0.27 15.38 8.29 -92.71 -0.77 14.61 16 25 H 0.02 1.13 7.22 -2.39 -0.02 1.12 16 26 H 0.09 3.04 8.10 -2.39 -0.02 3.02 16 27 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.11 2.33 7.94 -2.39 -0.02 2.31 16 30 H 0.08 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -74.62 251.70 3.63 -71.00 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.32 Total: 24.48 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 2.87 Total: -12.78 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -1.54 Total: -85.59 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.06 Total: -41.11 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -74.62 3.63 -71.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229498373.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.956 kcal (2) G-P(sol) polarization free energy of solvation -74.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds