Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47254 * 2 1 4 4 H 1.09004 * 109.46550 * 56.19872 * 3 2 1 5 5 C 1.50698 * 109.47085 * 176.19784 * 3 2 1 6 6 H 1.07996 * 119.99743 * 114.45840 * 5 3 2 7 7 C 1.37878 * 119.99946 * 294.45957 * 5 3 2 8 8 N 1.31513 * 119.99532 * 162.85499 * 7 5 3 9 9 Si 1.86796 * 120.00061 * 342.85506 * 7 5 3 10 10 H 1.48502 * 109.46730 * 180.02562 * 9 7 5 11 11 H 1.48499 * 109.47158 * 299.99642 * 9 7 5 12 12 H 1.48497 * 109.47223 * 59.99916 * 9 7 5 13 13 N 1.46501 * 109.46982 * 296.20133 * 3 2 1 14 14 C 1.37362 * 125.83279 * 299.68315 * 13 3 2 15 15 N 1.29400 * 108.82830 * 179.87849 * 14 13 3 16 16 N 1.40175 * 108.14087 * 0.38782 * 15 14 13 17 17 H 0.96996 * 126.34841 * 179.75472 * 16 15 14 18 18 C 1.34812 * 125.82993 * 120.00267 * 13 3 2 19 19 O 1.21811 * 126.30894 * 359.92128 * 18 13 3 20 20 H 1.08996 * 109.47125 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47119 * 299.99813 * 1 2 3 22 22 H 1.08999 * 109.47085 * 59.99919 * 1 2 3 23 23 H 1.09004 * 109.47051 * 239.99896 * 2 1 3 24 24 H 1.09000 * 109.47159 * 120.00631 * 2 1 3 25 25 H 0.97000 * 120.00343 * 354.71641 * 8 7 5 26 26 H 1.07996 * 125.58140 * 0.04688 * 14 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6222 1.9756 0.8540 5 6 3.5441 1.4435 0.0942 6 1 4.1365 1.8122 -0.7301 7 6 4.1639 0.9737 1.2327 8 7 5.4397 0.6560 1.2034 9 14 3.1913 0.7885 2.8168 10 1 4.0813 0.2693 3.8861 11 1 2.6499 2.1104 3.2226 12 1 2.0699 -0.1607 2.6011 13 7 1.6279 2.1062 -1.2393 14 6 1.9703 1.7179 -2.5117 15 7 1.4268 2.5327 -3.3574 16 7 0.7093 3.4965 -2.6355 17 1 0.2035 4.2354 -3.0084 18 6 0.8528 3.2058 -1.3255 19 8 0.3701 3.8230 -0.3928 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5139 0.8899 25 1 5.9261 0.6788 0.3645 26 1 2.5892 0.8699 -2.7648 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230392661.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 9.059005 kcal Electronic energy + Delta-G solvation = -12824.461719 eV Core-core repulsion = 10518.131713 eV Total energy + Delta-G solvation = -2306.330006 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.33494 -38.29325 -37.60698 -34.53018 -33.18355 -31.35765 -29.26416 -24.76728 -24.13561 -23.36311 -21.43599 -19.92095 -18.88397 -17.54183 -17.37072 -16.30620 -15.83574 -15.59152 -14.89894 -14.79858 -14.40852 -13.91122 -13.57710 -12.90218 -12.75528 -12.57839 -12.34418 -11.79709 -11.64027 -11.39473 -11.36080 -10.87090 -10.56723 -9.63303 -8.79704 -6.48500 1.07755 1.17060 1.44938 1.53712 1.71192 1.72436 2.42774 2.53658 2.96402 3.81836 4.11455 4.23972 4.28815 4.44167 4.55495 4.84586 5.07711 5.10884 5.24836 5.43658 5.46172 5.69449 5.91813 6.00617 6.47737 6.70905 7.12338 7.27846 8.57442 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.040554 B = 0.013918 C = 0.013030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.269503 B = 2011.311455 C = 2148.432049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.259 3.741 4 H 0.037 0.963 5 C -0.619 4.619 6 H 0.040 0.960 7 C 0.006 3.994 8 N -0.920 5.920 9 Si 1.058 2.942 10 H -0.282 1.282 11 H -0.282 1.282 12 H -0.227 1.227 13 N -0.528 5.528 14 C 0.283 3.717 15 N -0.305 5.305 16 N -0.543 5.543 17 H 0.460 0.540 18 C 0.626 3.374 19 O -0.609 6.609 20 H 0.078 0.922 21 H 0.043 0.957 22 H 0.038 0.962 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.262 0.738 26 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 -2.545 -5.447 10.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.175 4.175 3 C 0.157 3.843 4 H 0.055 0.945 5 C -0.657 4.657 6 H 0.058 0.942 7 C -0.197 4.197 8 N -0.554 5.554 9 Si 0.880 3.120 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.150 1.150 13 N -0.253 5.253 14 C -0.016 4.016 15 N -0.131 5.131 16 N -0.294 5.294 17 H 0.310 0.690 18 C 0.324 3.676 19 O -0.488 6.488 20 H 0.097 0.903 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -8.784 -2.361 -4.147 9.997 hybrid contribution 0.312 1.018 -1.111 1.539 sum -8.472 -1.343 -5.258 10.062 Atomic orbital electron populations 1.21769 0.95515 1.02325 1.00683 1.22275 0.95459 0.95849 1.03873 1.19312 0.94467 0.90702 0.79833 0.94477 1.22231 0.90592 1.47722 1.05150 0.94167 1.26746 0.96646 0.91775 1.04497 1.70945 1.10460 1.43941 1.30025 0.83944 0.76116 0.78644 0.73338 1.20783 1.20839 1.15019 1.46388 1.43718 1.25654 1.09505 1.26365 0.96280 0.99359 0.79556 1.76983 1.14407 1.02259 1.19419 1.46593 1.49780 1.29373 1.03662 0.68984 1.17146 0.82651 0.82965 0.84886 1.90993 1.58144 1.57939 1.41695 0.90298 0.93773 0.94272 0.90303 0.90402 0.92888 0.73243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.53 9.79 71.98 0.70 -3.82 15 2 C -0.14 -4.92 5.08 30.60 0.16 -4.76 15 3 C 0.26 11.36 1.91 44.24 0.08 11.45 15 4 H 0.04 1.81 6.40 -2.38 -0.02 1.80 15 5 C -0.62 -31.73 8.80 25.60 0.23 -31.50 15 6 H 0.04 2.24 7.90 -2.91 -0.02 2.22 15 7 C 0.01 0.30 5.32 84.66 0.45 0.75 15 8 N -0.92 -52.82 13.70 21.45 0.29 -52.53 15 9 Si 1.06 46.33 26.31 68.60 1.80 48.14 15 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 15 12 H -0.23 -8.37 5.67 99.48 0.56 -7.81 15 13 N -0.53 -21.19 1.99 -641.40 -1.28 -22.47 15 14 C 0.28 9.23 11.58 179.82 2.08 11.31 15 15 N -0.31 -9.69 12.64 -59.42 -0.75 -10.45 15 16 N -0.54 -17.96 7.40 -184.31 -1.36 -19.32 15 17 H 0.46 12.02 8.96 -213.28 -1.91 10.11 15 18 C 0.63 26.18 9.01 178.99 1.61 27.79 15 19 O -0.61 -29.73 17.63 -4.70 -0.08 -29.81 15 20 H 0.08 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.04 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.04 1.23 7.72 -2.39 -0.02 1.21 15 23 H 0.08 2.57 7.82 -2.39 -0.02 2.55 15 24 H 0.08 2.90 4.79 -2.39 -0.01 2.89 15 25 H 0.26 15.05 8.73 -92.71 -0.81 14.24 15 26 H 0.25 6.37 8.06 -2.91 -0.02 6.34 15 Total: -1.00 -64.91 227.68 3.04 -61.87 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -0.89 Total: 13.35 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 5.31 Total: 11.21 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -3.10 Total: -104.76 kcal Atomic # 8 Polarization: -29.73 SS G_CDS: -0.08 Total: -29.81 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.80 Total: 48.14 kcal Total: -64.91 3.04 -61.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230392661.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.928 kcal (2) G-P(sol) polarization free energy of solvation -64.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds