Wall clock time and date at job start Mon Mar 30 2020 01:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31130 * 126.54877 * 2 1 4 4 C 1.34496 * 105.61419 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.29175 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46889 * 89.99689 * 5 4 3 7 7 C 1.46906 * 110.99819 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.47032 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99952 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00153 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00159 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47121 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47203 * 120.00190 * 12 10 8 15 15 H 1.48501 * 109.47540 * 240.00291 * 12 10 8 16 16 N 1.29951 * 107.42513 * 359.97438 * 4 3 2 17 17 O 1.21305 * 110.24918 * 359.70797 * 16 4 3 18 18 H 1.09002 * 109.47152 * 90.00395 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.00496 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.00477 * 1 2 3 21 21 H 1.08999 * 109.47602 * 209.99851 * 5 4 3 22 22 H 1.09001 * 109.47155 * 330.00055 * 5 4 3 23 23 H 1.00902 * 111.00333 * 56.04822 * 6 5 4 24 24 H 1.08990 * 109.47080 * 300.00004 * 7 6 5 25 25 H 1.09000 * 109.46846 * 60.00586 * 7 6 5 26 26 H 0.96997 * 120.00403 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3886 0.0003 6 7 5.2225 1.6547 1.3851 7 6 6.4570 2.4502 1.4241 8 6 6.8473 2.7020 2.8577 9 1 6.2395 2.3099 3.6597 10 6 7.9810 3.4319 3.1455 11 7 8.7215 3.9090 2.1689 12 14 8.4652 3.7434 4.9225 13 1 7.4741 3.1043 5.8251 14 1 9.8099 3.1672 5.1775 15 1 8.4970 5.2060 5.1780 16 7 3.4646 -0.7242 0.0015 17 8 2.3029 -1.0736 0.0073 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 0.8900 0.5138 20 1 -0.3633 -0.8900 0.5139 21 1 5.5986 0.8367 -0.5130 22 1 4.6350 2.3333 -0.5142 23 1 5.3297 0.7948 1.9021 24 1 7.2559 1.9060 0.9206 25 1 6.2917 3.4022 0.9196 26 1 9.5193 4.4222 2.3713 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231805476.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:02 Heat of formation + Delta-G solvation = 63.680152 kcal Electronic energy + Delta-G solvation = -11810.977264 eV Core-core repulsion = 9507.015809 eV Total energy + Delta-G solvation = -2303.961455 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -45.39630 -36.38565 -34.97537 -33.37249 -32.20251 -28.94177 -27.92163 -25.10317 -23.24786 -21.64694 -20.95777 -17.99269 -17.40594 -16.40670 -15.01605 -14.88690 -14.43297 -13.84527 -13.57474 -13.41022 -13.05411 -12.25991 -12.07536 -11.57208 -11.43207 -11.25075 -10.82519 -10.74899 -10.69095 -10.06290 -9.69382 -9.23825 -8.51905 -7.46087 -6.06152 -4.08300 1.30536 2.43990 2.94861 3.30611 3.37620 3.43261 3.82685 4.26280 4.42978 5.04127 5.10075 5.13921 5.29921 5.37698 5.53986 5.76846 5.95029 6.05742 6.26184 7.11641 7.32101 7.71420 8.04592 8.24010 8.38325 8.48434 8.99843 9.56553 11.05079 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.075711 B = 0.006297 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.736997 B = 4445.267549 C = 4572.250085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.162 3.838 3 N -0.467 5.467 4 C 0.192 3.808 5 C 0.145 3.855 6 N -0.681 5.681 7 C 0.194 3.806 8 C -0.515 4.515 9 H 0.063 0.937 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.901 3.099 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.283 1.283 16 N -0.388 5.388 17 O 0.070 5.930 18 H 0.098 0.902 19 H 0.103 0.897 20 H 0.094 0.906 21 H 0.050 0.950 22 H 0.097 0.903 23 H 0.332 0.668 24 H -0.009 1.009 25 H 0.034 0.966 26 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 -7.617 -4.926 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.059 4.059 3 N -0.202 5.202 4 C -0.082 4.082 5 C 0.014 3.986 6 N -0.313 5.313 7 C 0.068 3.932 8 C -0.553 4.553 9 H 0.082 0.918 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.729 3.271 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.209 1.209 16 N -0.097 5.097 17 O 0.012 5.988 18 H 0.116 0.884 19 H 0.122 0.878 20 H 0.113 0.887 21 H 0.068 0.932 22 H 0.115 0.885 23 H 0.148 0.852 24 H 0.009 0.991 25 H 0.052 0.948 26 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.646 -7.035 -4.901 16.116 hybrid contribution 0.897 -0.447 0.643 1.191 sum -12.749 -7.481 -4.259 15.383 Atomic orbital electron populations 1.20321 0.80544 1.05680 1.05035 1.28854 0.98901 0.81088 0.97056 1.71920 1.00487 1.28601 1.19159 1.26050 0.95604 0.87744 0.98765 1.20205 0.86849 0.97064 0.94506 1.60710 1.39096 1.23347 1.08143 1.19628 0.83143 0.92524 0.97868 1.21171 1.08510 1.33721 0.91922 0.91841 1.24985 0.96193 0.95649 0.97716 1.69969 1.15945 1.36339 1.31389 0.86386 0.78242 0.77971 0.84495 1.19644 1.21042 1.20899 1.74645 0.97125 1.16133 1.21797 1.85256 1.11601 1.35869 1.66070 0.88388 0.87848 0.88719 0.93235 0.88451 0.85154 0.99088 0.94836 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.01 0.38 0.00 15 2 C 0.16 2.09 8.51 -13.05 -0.11 1.98 15 3 N -0.47 -7.89 11.55 -9.86 -0.11 -8.00 15 4 C 0.19 3.51 7.73 -156.37 -1.21 2.30 15 5 C 0.14 2.82 6.31 -4.98 -0.03 2.79 15 6 N -0.68 -15.58 6.48 -116.34 -0.75 -16.33 15 7 C 0.19 5.20 5.44 -4.97 -0.03 5.17 15 8 C -0.51 -14.88 9.32 -34.44 -0.32 -15.20 15 9 H 0.06 1.82 7.81 -52.49 -0.41 1.41 15 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 11 N -0.90 -26.96 13.29 55.43 0.74 -26.22 15 12 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 15 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 15 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 16 N -0.39 -6.81 12.16 30.90 0.38 -6.43 15 17 O 0.07 1.03 11.31 18.10 0.20 1.23 15 18 H 0.10 0.44 8.14 -51.93 -0.42 0.02 15 19 H 0.10 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 15 21 H 0.05 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.10 1.85 8.14 -51.93 -0.42 1.42 15 23 H 0.33 7.47 8.72 -39.29 -0.34 7.13 15 24 H -0.01 -0.24 8.14 -51.93 -0.42 -0.66 15 25 H 0.03 0.95 8.14 -51.93 -0.42 0.52 15 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 240.75 15.07 3.63 3.63 Total: -1.00 -32.78 240.75 -5.21 -37.99 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -2.85 Total: -1.36 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.42 Total: -1.43 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.24 Total: -56.99 kcal Atomic # 8 Polarization: 1.03 SS G_CDS: 0.20 Total: 1.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -32.78 -5.21 -37.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231805476.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.666 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds