Wall clock time and date at job start Mon Mar 30 2020 01:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31130 * 126.54877 * 2 1 4 4 C 1.34496 * 105.61419 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.29175 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.46889 * 89.99689 * 5 4 3 7 7 C 1.46906 * 110.99819 * 180.02562 * 6 5 4 8 8 C 1.50705 * 109.47032 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99952 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00153 * 179.97438 * 8 7 6 11 11 N 1.31521 * 120.00159 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47121 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47203 * 120.00190 * 12 10 8 15 15 H 1.48501 * 109.47540 * 240.00291 * 12 10 8 16 16 N 1.29951 * 107.42513 * 359.97438 * 4 3 2 17 17 O 1.21305 * 110.24918 * 359.70797 * 16 4 3 18 18 H 1.09002 * 109.47152 * 90.00395 * 1 2 3 19 19 H 1.09001 * 109.46980 * 330.00496 * 1 2 3 20 20 H 1.09004 * 109.47113 * 210.00477 * 1 2 3 21 21 H 1.08999 * 109.47602 * 209.99851 * 5 4 3 22 22 H 1.09001 * 109.47155 * 330.00055 * 5 4 3 23 23 H 1.00902 * 111.00333 * 56.04822 * 6 5 4 24 24 H 1.08990 * 109.47080 * 300.00004 * 7 6 5 25 25 H 1.09000 * 109.46846 * 60.00586 * 7 6 5 26 26 H 0.96997 * 120.00403 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8112 1.3886 0.0003 6 7 5.2225 1.6547 1.3851 7 6 6.4570 2.4502 1.4241 8 6 6.8473 2.7020 2.8577 9 1 6.2395 2.3099 3.6597 10 6 7.9810 3.4319 3.1455 11 7 8.7215 3.9090 2.1689 12 14 8.4652 3.7434 4.9225 13 1 7.4741 3.1043 5.8251 14 1 9.8099 3.1672 5.1775 15 1 8.4970 5.2060 5.1780 16 7 3.4646 -0.7242 0.0015 17 8 2.3029 -1.0736 0.0073 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3633 0.8900 0.5138 20 1 -0.3633 -0.8900 0.5139 21 1 5.5986 0.8367 -0.5130 22 1 4.6350 2.3333 -0.5142 23 1 5.3297 0.7948 1.9021 24 1 7.2559 1.9060 0.9206 25 1 6.2917 3.4022 0.9196 26 1 9.5193 4.4222 2.3713 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231805476.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:02 Heat of formation + Delta-G solvation = 37.264602 kcal Electronic energy + Delta-G solvation = -11812.122728 eV Core-core repulsion = 9507.015809 eV Total energy + Delta-G solvation = -2305.106919 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -46.64530 -37.94336 -36.48598 -34.90506 -33.98377 -30.08197 -29.52367 -26.96676 -24.56138 -23.65025 -22.25717 -19.23816 -18.94001 -18.29984 -16.86771 -16.38797 -16.02831 -15.41831 -15.01677 -14.33169 -14.13148 -13.88594 -13.49785 -13.35086 -12.90746 -12.78472 -12.68213 -12.44444 -12.10933 -12.06305 -11.40009 -10.91228 -10.70868 -9.36963 -8.26879 -6.38428 0.17417 1.14758 1.40129 1.40827 1.54942 1.97491 2.37458 2.62479 3.01238 3.06761 3.58159 3.94471 4.24622 4.43093 4.60855 4.68746 4.71753 4.96514 5.07135 5.14752 5.18485 5.53096 5.90939 6.23344 6.46879 6.77651 7.19110 7.32023 8.85086 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.075711 B = 0.006297 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.736997 B = 4445.267549 C = 4572.250085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.184 3.816 3 N -0.504 5.504 4 C 0.173 3.827 5 C 0.149 3.851 6 N -0.681 5.681 7 C 0.209 3.791 8 C -0.539 4.539 9 H 0.062 0.938 10 C 0.004 3.996 11 N -0.931 5.931 12 Si 0.976 3.024 13 H -0.265 1.265 14 H -0.275 1.275 15 H -0.275 1.275 16 N -0.404 5.404 17 O 0.079 5.921 18 H 0.127 0.873 19 H 0.111 0.889 20 H 0.125 0.875 21 H 0.054 0.946 22 H 0.097 0.903 23 H 0.334 0.666 24 H -0.029 1.029 25 H 0.011 0.989 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.768 -8.219 -4.132 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.036 4.036 3 N -0.238 5.238 4 C -0.100 4.100 5 C 0.018 3.982 6 N -0.313 5.313 7 C 0.082 3.918 8 C -0.577 4.577 9 H 0.080 0.920 10 C -0.195 4.195 11 N -0.571 5.571 12 Si 0.800 3.200 13 H -0.189 1.189 14 H -0.201 1.201 15 H -0.201 1.201 16 N -0.113 5.113 17 O 0.019 5.981 18 H 0.145 0.855 19 H 0.130 0.870 20 H 0.143 0.857 21 H 0.072 0.928 22 H 0.115 0.885 23 H 0.150 0.850 24 H -0.011 1.011 25 H 0.029 0.971 26 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.225 -7.638 -4.120 17.525 hybrid contribution 1.245 -0.316 0.323 1.324 sum -13.980 -7.954 -3.797 16.527 Atomic orbital electron populations 1.20791 0.75805 1.07533 1.07359 1.30046 1.00683 0.79438 0.93414 1.71897 1.00303 1.30272 1.21328 1.25710 0.95685 0.88055 1.00582 1.20072 0.88010 0.97612 0.92476 1.60556 1.36884 1.23323 1.10508 1.19286 0.84042 0.91784 0.96712 1.21489 1.09150 1.34401 0.92708 0.91997 1.25945 0.95927 0.95019 1.02619 1.70082 1.16422 1.36727 1.33841 0.85233 0.78107 0.78089 0.78542 1.18911 1.20091 1.20088 1.74616 0.98740 1.15771 1.22162 1.85221 1.10959 1.36159 1.65779 0.85519 0.87046 0.85662 0.92828 0.88466 0.84964 1.01108 0.97057 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.52 10.51 71.24 0.75 0.22 15 2 C 0.18 4.33 8.51 88.38 0.75 5.08 15 3 N -0.50 -16.56 11.55 -303.17 -3.50 -20.06 15 4 C 0.17 6.31 7.73 138.46 1.07 7.38 15 5 C 0.15 5.94 6.31 85.56 0.54 6.48 15 6 N -0.68 -31.85 6.48 -521.98 -3.38 -35.23 15 7 C 0.21 11.52 5.44 85.56 0.47 11.99 15 8 C -0.54 -31.58 9.32 25.60 0.24 -31.35 15 9 H 0.06 3.56 7.81 -2.91 -0.02 3.54 15 10 C 0.00 0.21 5.46 84.65 0.46 0.67 15 11 N -0.93 -56.49 13.29 21.45 0.28 -56.21 15 12 Si 0.98 44.86 29.54 68.60 2.03 46.89 15 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 14 H -0.28 -12.20 7.11 99.48 0.71 -11.50 15 15 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 16 N -0.40 -13.94 12.16 -60.29 -0.73 -14.68 15 17 O 0.08 2.17 11.31 74.82 0.85 3.02 15 18 H 0.13 0.57 8.14 -2.39 -0.02 0.55 15 19 H 0.11 0.96 8.14 -2.39 -0.02 0.94 15 20 H 0.12 0.47 8.14 -2.38 -0.02 0.45 15 21 H 0.05 2.07 8.14 -2.39 -0.02 2.05 15 22 H 0.10 3.81 8.14 -2.39 -0.02 3.79 15 23 H 0.33 15.30 8.72 -89.69 -0.78 14.52 15 24 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 15 25 H 0.01 0.67 8.14 -2.39 -0.02 0.65 15 26 H 0.27 15.10 8.31 -92.71 -0.77 14.33 15 Total: -1.00 -71.02 240.75 0.23 -70.79 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: 0.41 Total: 5.00 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: 4.28 Total: 0.48 kcal Atomic # 7 Polarization: -118.84 SS G_CDS: -7.33 Total: -126.18 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.85 Total: 3.02 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.02 0.23 -70.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231805476.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.060 kcal (2) G-P(sol) polarization free energy of solvation -71.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds