Wall clock time and date at job start Mon Mar 30 2020 01:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29954 * 126.28654 * 2 1 4 4 O 1.21293 * 110.25286 * 180.02562 * 3 2 1 5 5 C 1.33642 * 109.81058 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55339 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47431 * 269.97717 * 6 5 4 8 8 N 1.46496 * 109.47318 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99900 * 179.97438 * 8 7 6 10 10 H 1.08000 * 120.00065 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00217 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99569 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00193 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47078 * 90.00003 * 13 11 9 15 15 H 1.48496 * 109.47036 * 210.00225 * 13 11 9 16 16 H 1.48497 * 109.46774 * 329.99836 * 13 11 9 17 17 N 1.31130 * 106.90015 * 0.02562 * 5 4 3 18 18 H 1.08999 * 109.47105 * 89.97733 * 1 2 3 19 19 H 1.09005 * 109.47013 * 209.97845 * 1 2 3 20 20 H 1.08996 * 109.47115 * 329.97748 * 1 2 3 21 21 H 1.09000 * 109.46935 * 29.97313 * 6 5 4 22 22 H 1.08997 * 109.47416 * 149.97136 * 6 5 4 23 23 H 1.09000 * 109.46731 * 299.99720 * 7 6 5 24 24 H 1.08997 * 109.47295 * 59.99345 * 7 6 5 25 25 H 0.96999 * 120.00239 * 359.97438 * 8 7 6 26 26 H 0.97005 * 119.99545 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7125 -0.0005 5 6 3.5299 -0.6210 -0.0003 6 6 4.7969 -1.4368 -0.0003 7 6 5.2254 -1.7137 -1.4427 8 7 6.4575 -2.5062 -1.4426 9 6 7.0327 -2.8778 -2.6285 10 1 6.5782 -2.5862 -3.5639 11 6 8.2004 -3.6283 -2.6285 12 7 8.7545 -3.9832 -1.4886 13 14 8.9854 -4.1346 -4.2462 14 1 9.9503 -3.0910 -4.6761 15 1 9.6984 -5.4249 -4.0680 16 1 7.9312 -4.2904 -5.2805 17 7 2.3030 -1.0840 -0.0002 18 1 -0.3633 0.0004 -1.0277 19 1 -0.3633 -0.8902 0.5135 20 1 -0.3633 0.8897 0.5142 21 1 5.5843 -0.8849 0.5130 22 1 4.6208 -2.3815 0.5141 23 1 4.4380 -2.2655 -1.9560 24 1 5.4015 -0.7690 -1.9571 25 1 6.8659 -2.7678 -0.6026 26 1 9.5703 -4.5080 -1.4886 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231891586.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:24 Heat of formation + Delta-G solvation = 71.677981 kcal Electronic energy + Delta-G solvation = -11824.210289 eV Core-core repulsion = 9520.595646 eV Total energy + Delta-G solvation = -2303.614643 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.44251 -36.11251 -35.53076 -33.42346 -31.45389 -29.39852 -28.58636 -24.55009 -23.35020 -22.01847 -20.92174 -17.96995 -17.49942 -16.93418 -15.08013 -14.50488 -14.44838 -13.69261 -13.67121 -13.47742 -13.10606 -12.55760 -12.25535 -11.72009 -11.21549 -11.12627 -10.94075 -10.86403 -10.77748 -10.14675 -9.84076 -9.64101 -8.94216 -7.02018 -5.81911 -3.12334 1.26354 2.31849 2.96366 3.42453 3.47684 3.49337 3.73661 4.11731 4.56579 4.99220 5.25661 5.29286 5.39138 5.47347 5.51122 5.62765 5.82770 5.98444 6.09416 6.12523 6.58653 6.62841 7.66099 8.28024 8.35781 9.47755 10.00120 10.35792 11.40719 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.088046 B = 0.006140 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 317.938731 B = 4559.266753 C = 4640.749494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.163 3.837 3 N -0.395 5.395 4 O 0.073 5.927 5 C 0.208 3.792 6 C -0.040 4.040 7 C 0.160 3.840 8 N -0.730 5.730 9 C -0.244 4.244 10 H 0.072 0.928 11 C -0.011 4.011 12 N -0.932 5.932 13 Si 0.910 3.090 14 H -0.289 1.289 15 H -0.291 1.291 16 H -0.281 1.281 17 N -0.488 5.488 18 H 0.087 0.913 19 H 0.090 0.910 20 H 0.083 0.917 21 H 0.104 0.896 22 H 0.112 0.888 23 H 0.029 0.971 24 H 0.027 0.973 25 H 0.386 0.614 26 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 6.669 3.977 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.110 4.110 3 N -0.106 5.106 4 O 0.016 5.984 5 C -0.013 4.013 6 C -0.080 4.080 7 C 0.031 3.969 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.090 0.910 11 C -0.207 4.207 12 N -0.580 5.580 13 Si 0.741 3.259 14 H -0.216 1.216 15 H -0.217 1.217 16 H -0.207 1.207 17 N -0.222 5.222 18 H 0.105 0.895 19 H 0.108 0.892 20 H 0.102 0.898 21 H 0.122 0.878 22 H 0.130 0.870 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.220 0.780 26 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.862 7.146 3.805 15.198 hybrid contribution 0.761 -0.425 -0.592 1.054 sum -12.100 6.721 3.213 14.210 Atomic orbital electron populations 1.20092 0.83223 1.04354 1.04142 1.25902 1.00521 0.83856 1.00736 1.74596 0.89571 1.24121 1.22281 1.85287 1.22127 1.25139 1.65797 1.28935 0.97062 0.81748 0.93517 1.20579 0.87257 0.97946 1.02177 1.20576 0.90513 0.95522 0.90311 1.42244 1.25268 1.63181 1.06860 1.19201 1.04896 1.27450 0.85897 0.90998 1.24760 0.98178 1.00770 0.97032 1.69657 1.21689 1.42654 1.24009 0.86146 0.79207 0.77754 0.82816 1.21595 1.21676 1.20683 1.71949 0.99825 1.29159 1.21272 0.89473 0.89157 0.89770 0.87750 0.86962 0.95282 0.95529 0.77990 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 36.01 0.38 -0.19 15 2 C 0.16 2.35 8.22 -156.37 -1.28 1.07 15 3 N -0.40 -6.20 12.16 30.90 0.38 -5.83 15 4 O 0.07 1.16 11.31 18.11 0.20 1.36 15 5 C 0.21 3.25 7.77 -13.06 -0.10 3.15 15 6 C -0.04 -0.62 5.96 -27.88 -0.17 -0.78 15 7 C 0.16 3.12 6.24 -4.04 -0.03 3.10 15 8 N -0.73 -17.98 5.60 -59.91 -0.34 -18.32 15 9 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 15 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 15 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 15 12 N -0.93 -27.65 13.06 55.49 0.72 -26.92 15 13 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 15 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 17 N -0.49 -7.85 11.55 -9.87 -0.11 -7.96 15 18 H 0.09 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.09 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.08 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.10 1.43 8.14 -51.93 -0.42 1.01 15 22 H 0.11 1.66 8.14 -51.93 -0.42 1.23 15 23 H 0.03 0.60 8.14 -51.93 -0.42 0.17 15 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 15 25 H 0.39 9.74 7.67 -40.82 -0.31 9.43 15 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 LS Contribution 239.53 15.07 3.61 3.61 Total: -1.00 -31.29 239.53 -4.82 -36.11 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -2.82 Total: 1.78 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.45 Total: -0.96 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.65 Total: -59.03 kcal Atomic # 8 Polarization: 1.16 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -31.29 -4.82 -36.11 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231891586.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.789 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds