Wall clock time and date at job start Mon Mar 30 2020 02:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 5 5 C 1.50706 * 109.46563 * 66.04606 * 4 2 1 6 6 N 1.30452 * 126.06958 * 90.03429 * 5 4 2 7 7 O 1.21281 * 110.67999 * 179.97438 * 6 5 4 8 8 C 1.34749 * 109.53692 * 359.97438 * 7 6 5 9 9 C 1.40340 * 126.79606 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99927 * 179.97438 * 9 8 7 11 11 C 1.40463 * 119.99640 * 359.97060 * 9 8 7 12 12 N 1.30503 * 120.00466 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99563 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47360 * 60.00322 * 13 11 9 15 15 H 1.48502 * 109.47250 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47420 * 300.00079 * 13 11 9 17 17 N 1.33330 * 106.41147 * 359.73493 * 8 7 6 18 18 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 19 19 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 20 20 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 22 22 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 23 23 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 24 24 H 1.08994 * 109.47410 * 186.04624 * 4 2 1 25 25 H 1.08999 * 109.47216 * 306.04953 * 4 2 1 26 26 H 0.96995 * 120.00382 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 6 1.6370 -2.2204 0.9727 6 7 2.3542 -3.1240 0.3636 7 8 1.8015 -4.2031 0.3965 8 6 0.6318 -4.0904 1.0559 9 6 -0.2949 -5.1146 1.3048 10 1 -1.2032 -4.9006 1.8484 11 6 -0.0409 -6.4179 0.8468 12 7 1.0564 -6.6765 0.1894 13 14 -1.2740 -7.7813 1.1787 14 1 -2.5777 -7.4312 0.5597 15 1 -0.7754 -9.0526 0.5954 16 1 -1.4497 -7.9439 2.6443 17 7 0.5320 -2.8148 1.4307 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.7044 1.8723 0.9233 22 1 3.0827 1.3433 -0.0709 23 1 1.5898 1.9164 -0.8524 24 1 3.0798 -0.6610 1.1755 25 1 1.5612 -0.3873 2.0628 26 1 1.2319 -7.5766 -0.1266 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234243326.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:36 Heat of formation + Delta-G solvation = 53.608427 kcal Electronic energy + Delta-G solvation = -12367.246850 eV Core-core repulsion = 10062.848652 eV Total energy + Delta-G solvation = -2304.398198 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.97467 -37.05591 -34.07690 -33.36024 -30.58814 -27.40215 -27.22283 -26.32082 -22.27664 -21.52009 -20.25288 -17.56456 -15.93128 -15.42167 -15.19787 -14.72833 -14.68468 -14.14797 -13.39595 -12.30552 -12.16071 -11.89219 -11.58034 -11.43620 -11.43040 -11.22729 -11.16834 -10.50484 -10.02911 -9.89072 -9.52496 -8.87340 -8.26205 -7.99052 -7.04922 -4.98521 2.83445 2.97524 3.01414 3.29172 3.75600 3.80617 4.56601 5.07330 5.15454 5.39677 5.45897 5.58282 5.64894 5.80982 5.94566 5.98667 6.04737 6.48915 6.66207 6.87937 7.28836 7.32356 7.51970 7.92700 8.14362 8.36545 8.50389 9.94466 10.44341 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.080438 B = 0.008713 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.011366 B = 3212.665011 C = 3407.242729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.543 5.543 3 C 0.028 3.972 4 C 0.160 3.840 5 C 0.163 3.837 6 N -0.457 5.457 7 O 0.047 5.953 8 C 0.302 3.698 9 C -0.418 4.418 10 H 0.111 0.889 11 C 0.071 3.929 12 N -0.765 5.765 13 Si 0.936 3.064 14 H -0.260 1.260 15 H -0.274 1.274 16 H -0.260 1.260 17 N -0.614 5.614 18 H 0.059 0.941 19 H 0.023 0.977 20 H 0.083 0.917 21 H 0.022 0.978 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.522 5.180 0.565 5.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.268 5.268 3 C -0.120 4.120 4 C 0.031 3.969 5 C -0.111 4.111 6 N -0.185 5.185 7 O -0.001 6.001 8 C 0.111 3.889 9 C -0.456 4.456 10 H 0.129 0.871 11 C -0.154 4.154 12 N -0.392 5.392 13 Si 0.759 3.241 14 H -0.184 1.184 15 H -0.199 1.199 16 H -0.184 1.184 17 N -0.359 5.359 18 H 0.078 0.922 19 H 0.042 0.958 20 H 0.101 0.899 21 H 0.041 0.959 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.102 0.898 25 H 0.068 0.932 26 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.681 5.281 -0.135 5.327 hybrid contribution -0.827 -0.404 0.810 1.226 sum -1.508 4.878 0.675 5.150 Atomic orbital electron populations 1.22401 0.86699 1.03690 0.99326 1.61855 1.08784 1.12871 1.43251 1.22346 1.00627 0.88910 1.00136 1.19955 0.99457 0.85931 0.91563 1.24609 0.90998 0.97143 0.98392 1.74308 1.24139 0.93252 1.26826 1.85545 1.29381 1.25116 1.60060 1.24200 0.85932 0.91324 0.87446 1.18505 1.04066 0.89705 1.33302 0.87097 1.26181 0.96268 1.00404 0.92519 1.69625 1.22306 1.23644 1.23612 0.85897 0.80131 0.78030 0.80056 1.18403 1.19887 1.18422 1.72209 1.24107 1.04697 1.34897 0.92250 0.95847 0.89856 0.95913 0.91509 0.91535 0.89825 0.93164 0.89653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.43 60.07 0.57 1.05 15 2 N -0.54 -10.09 5.01 -252.72 -1.27 -11.36 15 3 C 0.03 0.39 9.57 60.07 0.57 0.96 15 4 C 0.16 3.25 5.59 -4.97 -0.03 3.22 15 5 C 0.16 4.21 6.79 -156.78 -1.06 3.15 15 6 N -0.46 -12.89 12.15 31.51 0.38 -12.51 15 7 O 0.05 1.40 9.74 15.14 0.15 1.54 15 8 C 0.30 8.70 7.82 -16.35 -0.13 8.57 15 9 C -0.42 -11.13 9.48 -37.95 -0.36 -11.49 15 10 H 0.11 2.77 7.85 -52.49 -0.41 2.36 15 11 C 0.07 1.74 5.50 -17.28 -0.10 1.64 15 12 N -0.76 -19.70 12.06 55.57 0.67 -19.03 15 13 Si 0.94 17.70 29.56 -169.99 -5.03 12.68 15 14 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 15 H -0.27 -5.00 7.11 56.52 0.40 -4.60 15 16 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 17 N -0.61 -16.93 10.81 -11.51 -0.12 -17.06 15 18 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 19 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 20 H 0.08 1.80 6.55 -51.93 -0.34 1.46 15 21 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 15 22 H 0.07 0.85 8.12 -51.93 -0.42 0.43 15 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.08 1.56 8.06 -51.93 -0.42 1.14 15 25 H 0.05 0.96 8.12 -51.93 -0.42 0.54 15 26 H 0.29 6.68 8.29 -40.82 -0.34 6.34 15 LS Contribution 234.38 15.07 3.53 3.53 Total: -1.00 -30.50 234.38 -5.05 -35.56 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -2.84 Total: -0.46 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -0.53 Total: 7.10 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -0.34 Total: -59.96 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.15 Total: 1.54 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.50 -5.05 -35.56 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234243326.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.166 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds