Wall clock time and date at job start Mon Mar 30 2020 02:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 5 5 C 1.50706 * 109.46563 * 66.04606 * 4 2 1 6 6 N 1.30452 * 126.06958 * 90.03429 * 5 4 2 7 7 O 1.21281 * 110.67999 * 179.97438 * 6 5 4 8 8 C 1.34749 * 109.53692 * 359.97438 * 7 6 5 9 9 C 1.40340 * 126.79606 * 180.02562 * 8 7 6 10 10 H 1.07997 * 119.99927 * 179.97438 * 9 8 7 11 11 C 1.40463 * 119.99640 * 359.97060 * 9 8 7 12 12 N 1.30503 * 120.00466 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99563 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47360 * 60.00322 * 13 11 9 15 15 H 1.48502 * 109.47250 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47420 * 300.00079 * 13 11 9 17 17 N 1.33330 * 106.41147 * 359.73493 * 8 7 6 18 18 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 19 19 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 20 20 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46703 * 63.95759 * 3 2 1 22 22 H 1.08998 * 109.46913 * 183.95445 * 3 2 1 23 23 H 1.08996 * 109.47095 * 303.95518 * 3 2 1 24 24 H 1.08994 * 109.47410 * 186.04624 * 4 2 1 25 25 H 1.08999 * 109.47216 * 306.04953 * 4 2 1 26 26 H 0.96995 * 120.00382 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9956 -0.7659 1.1375 5 6 1.6370 -2.2204 0.9727 6 7 2.3542 -3.1240 0.3636 7 8 1.8015 -4.2031 0.3965 8 6 0.6318 -4.0904 1.0559 9 6 -0.2949 -5.1146 1.3048 10 1 -1.2032 -4.9006 1.8484 11 6 -0.0409 -6.4179 0.8468 12 7 1.0564 -6.6765 0.1894 13 14 -1.2740 -7.7813 1.1787 14 1 -2.5777 -7.4312 0.5597 15 1 -0.7754 -9.0526 0.5954 16 1 -1.4497 -7.9439 2.6443 17 7 0.5320 -2.8148 1.4307 18 1 -0.3634 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 1.7044 1.8723 0.9233 22 1 3.0827 1.3433 -0.0709 23 1 1.5898 1.9164 -0.8524 24 1 3.0798 -0.6610 1.1755 25 1 1.5612 -0.3873 2.0628 26 1 1.2319 -7.5766 -0.1266 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234243326.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:35 Heat of formation + Delta-G solvation = 29.213458 kcal Electronic energy + Delta-G solvation = -12368.304695 eV Core-core repulsion = 10062.848652 eV Total energy + Delta-G solvation = -2305.456043 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.03190 -38.51571 -36.05458 -35.33669 -32.58318 -29.10937 -28.50343 -28.29504 -23.86743 -23.54003 -22.08128 -19.50085 -17.94989 -17.36145 -16.93959 -16.20250 -16.15879 -15.77858 -15.07431 -14.01791 -13.64684 -13.43483 -13.25309 -13.06597 -12.81803 -12.71091 -12.61915 -12.10531 -11.99546 -11.82005 -11.40567 -10.97242 -10.31213 -9.38066 -8.93728 -7.07676 1.01426 1.41534 1.54815 1.59924 1.98515 2.16219 2.96381 3.14647 3.30079 3.52803 3.90092 4.22530 4.38049 4.44332 4.59876 4.71163 4.80083 4.94936 4.98582 5.04137 5.46991 5.85670 5.89900 6.07046 6.13413 6.32458 6.46640 8.08462 8.33801 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.080438 B = 0.008713 C = 0.008216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.011366 B = 3212.665011 C = 3407.242729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.563 5.563 3 C 0.029 3.971 4 C 0.163 3.837 5 C 0.173 3.827 6 N -0.488 5.488 7 O 0.012 5.988 8 C 0.269 3.731 9 C -0.436 4.436 10 H 0.122 0.878 11 C 0.029 3.971 12 N -0.797 5.797 13 Si 1.022 2.978 14 H -0.251 1.251 15 H -0.260 1.260 16 H -0.250 1.250 17 N -0.633 5.633 18 H 0.084 0.916 19 H 0.037 0.963 20 H 0.038 0.962 21 H 0.039 0.961 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.062 0.938 26 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.460 5.285 0.818 5.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.289 5.289 3 C -0.118 4.118 4 C 0.033 3.967 5 C -0.102 4.102 6 N -0.223 5.223 7 O -0.030 6.030 8 C 0.080 3.920 9 C -0.473 4.473 10 H 0.139 0.861 11 C -0.193 4.193 12 N -0.424 5.424 13 Si 0.839 3.161 14 H -0.174 1.174 15 H -0.184 1.184 16 H -0.174 1.174 17 N -0.378 5.378 18 H 0.102 0.898 19 H 0.055 0.945 20 H 0.057 0.943 21 H 0.058 0.942 22 H 0.095 0.905 23 H 0.103 0.897 24 H 0.118 0.882 25 H 0.080 0.920 26 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.612 5.384 0.110 5.621 hybrid contribution -0.525 -0.395 0.712 0.969 sum -2.137 4.989 0.822 5.489 Atomic orbital electron populations 1.22309 0.86698 1.01318 1.01211 1.61814 1.09040 1.15627 1.42443 1.22450 1.01258 0.86242 1.01830 1.20105 1.00602 0.83040 0.92923 1.25538 0.89670 0.99083 0.95897 1.74243 1.25244 0.93515 1.29272 1.85479 1.30067 1.26066 1.61436 1.24846 0.86453 0.92496 0.88167 1.19090 1.04072 0.90701 1.33403 0.86056 1.27394 0.98335 1.02366 0.91226 1.69690 1.24143 1.25260 1.23331 0.84655 0.76952 0.74129 0.80392 1.17433 1.18381 1.17380 1.72211 1.25139 1.04541 1.35953 0.89784 0.94497 0.94269 0.94222 0.90460 0.89657 0.88245 0.91959 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.14 9.43 127.69 1.20 2.35 15 2 N -0.56 -20.11 5.01 -953.46 -4.78 -24.88 15 3 C 0.03 0.72 9.57 127.69 1.22 1.94 15 4 C 0.16 6.46 5.59 85.56 0.48 6.94 15 5 C 0.17 9.11 6.79 138.61 0.94 10.05 15 6 N -0.49 -28.42 12.15 -56.63 -0.69 -29.11 15 7 O 0.01 0.71 9.74 64.25 0.63 1.34 15 8 C 0.27 16.01 7.82 85.06 0.66 16.68 15 9 C -0.44 -23.51 9.48 23.32 0.22 -23.29 15 10 H 0.12 6.08 7.85 -2.91 -0.02 6.06 15 11 C 0.03 1.39 5.50 85.43 0.47 1.86 15 12 N -0.80 -41.37 12.06 21.91 0.26 -41.11 15 13 Si 1.02 34.90 29.56 68.60 2.03 36.93 15 14 H -0.25 -8.18 7.11 99.48 0.71 -7.47 15 15 H -0.26 -8.23 7.11 99.48 0.71 -7.53 15 16 H -0.25 -8.14 7.11 99.48 0.71 -7.43 15 17 N -0.63 -35.80 10.81 -305.23 -3.30 -39.10 15 18 H 0.08 2.45 8.14 -2.39 -0.02 2.43 15 19 H 0.04 1.16 8.14 -2.39 -0.02 1.14 15 20 H 0.04 1.71 6.55 -2.38 -0.02 1.69 15 21 H 0.04 0.85 8.14 -2.39 -0.02 0.83 15 22 H 0.08 1.73 8.12 -2.39 -0.02 1.72 15 23 H 0.08 1.78 8.14 -2.39 -0.02 1.76 15 24 H 0.10 3.58 8.06 -2.39 -0.02 3.56 15 25 H 0.06 2.30 8.12 -2.39 -0.02 2.28 15 26 H 0.31 13.86 8.29 -92.71 -0.77 13.09 15 Total: -1.00 -67.81 234.38 0.53 -67.28 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.18 Total: 12.13 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 5.20 Total: 16.52 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -8.50 Total: -134.20 kcal Atomic # 8 Polarization: 0.71 SS G_CDS: 0.63 Total: 1.34 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.93 kcal Total: -67.81 0.53 -67.28 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234243326.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.490 kcal (2) G-P(sol) polarization free energy of solvation -67.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds