Wall clock time and date at job start Mon Mar 30 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46973 * 2 1 4 4 C 1.52996 * 109.46909 * 119.99649 * 2 1 3 5 5 C 1.50702 * 109.47159 * 294.99773 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 C 1.50695 * 109.47004 * 239.99676 * 2 1 3 14 14 N 1.31043 * 126.46251 * 119.71059 * 13 2 1 15 15 C 1.35020 * 105.59046 * 179.89095 * 14 13 2 16 16 N 1.38844 * 126.38821 * 180.13329 * 15 14 13 17 17 N 1.30632 * 107.22629 * 0.37762 * 15 14 13 18 18 O 1.21294 * 110.12259 * 359.76079 * 17 15 14 19 19 H 1.09001 * 109.46930 * 60.00301 * 1 2 3 20 20 H 1.08999 * 109.46998 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.46896 * 300.00441 * 1 2 3 22 22 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 23 23 H 1.08994 * 109.47405 * 54.99807 * 4 2 1 24 24 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 25 25 H 0.96994 * 120.00066 * 180.30537 * 16 15 14 26 26 H 0.97006 * 119.99546 * 0.30960 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9744 2.3757 7 6 1.9879 -0.4047 3.7287 8 7 2.6711 -1.5217 3.8515 9 14 1.4871 0.5561 5.2502 10 1 0.7309 1.7678 4.8439 11 1 0.6298 -0.2955 6.1135 12 1 2.7019 0.9596 6.0031 13 6 2.0324 -0.7105 -1.2304 14 7 2.7844 -0.1979 -2.1732 15 6 2.9822 -1.1949 -3.0619 16 7 3.7252 -1.1197 -4.2324 17 7 2.3397 -2.2420 -2.6179 18 8 1.7900 -1.9805 -1.5687 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 3.1264 -0.7994 1.2056 23 1 1.6054 -1.7196 1.2953 24 1 2.9152 -1.8465 4.7324 25 1 3.8026 -1.8962 -4.8084 26 1 4.1669 -0.2905 -4.4740 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235094286.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:23 Heat of formation + Delta-G solvation = 55.934522 kcal Electronic energy + Delta-G solvation = -12219.869137 eV Core-core repulsion = 9915.571807 eV Total energy + Delta-G solvation = -2304.297331 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.79746 -36.09824 -35.74140 -33.16944 -32.07852 -30.04579 -27.10454 -24.58670 -23.21591 -22.44372 -19.94768 -17.40089 -17.34646 -16.65644 -16.15247 -15.40567 -14.55075 -14.24895 -13.32804 -12.59670 -12.32337 -11.96198 -11.87723 -11.35075 -10.98182 -10.86950 -10.57595 -10.47487 -10.31373 -10.05097 -9.43560 -9.21160 -8.43166 -8.32225 -6.06664 -4.10429 1.81058 2.93868 3.19787 3.29302 3.37160 3.40131 3.56838 4.38389 4.51660 5.29826 5.38211 5.76293 5.84241 5.90765 6.25918 6.37748 6.59760 6.70835 6.86632 7.22765 7.49948 7.51878 7.60510 7.89261 8.25452 8.89022 8.94333 9.53910 11.04721 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.071295 B = 0.007978 C = 0.007736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.638329 B = 3508.948647 C = 3618.605509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.002 4.002 3 H 0.105 0.895 4 C 0.028 3.972 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.891 5.891 9 Si 0.895 3.105 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.240 3.760 14 N -0.531 5.531 15 C 0.415 3.585 16 N -0.820 5.820 17 N -0.452 5.452 18 O 0.059 5.941 19 H 0.040 0.960 20 H 0.058 0.942 21 H 0.084 0.916 22 H 0.022 0.978 23 H 0.030 0.970 24 H 0.262 0.738 25 H 0.413 0.587 26 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.063 2.134 -10.551 10.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.123 0.877 4 C -0.010 4.010 5 C -0.558 4.558 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.020 3.980 14 N -0.271 5.271 15 C 0.052 3.948 16 N -0.379 5.379 17 N -0.182 5.182 18 O 0.017 5.983 19 H 0.059 0.941 20 H 0.077 0.923 21 H 0.103 0.897 22 H 0.040 0.960 23 H 0.048 0.952 24 H 0.071 0.929 25 H 0.244 0.756 26 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.876 1.566 -10.879 11.026 hybrid contribution 0.165 0.458 0.559 0.741 sum -0.712 2.024 -10.320 10.541 Atomic orbital electron populations 1.21779 0.93028 1.02579 1.01888 1.20346 0.96525 0.98877 0.86496 0.87720 1.19250 0.96893 0.96128 0.88718 1.21108 1.35813 1.08589 0.90316 0.91880 1.25008 0.95016 0.95019 0.99227 1.69982 1.38371 1.20973 1.23650 0.86491 0.78309 0.80009 0.82928 1.19578 1.20985 1.21036 1.29245 0.90310 0.82077 0.96344 1.71879 1.21886 1.28880 1.04497 1.22130 0.94919 0.86536 0.91258 1.40641 1.58026 1.18181 1.21093 1.74767 1.20104 1.22014 1.01348 1.85233 1.55184 1.29348 1.28540 0.94098 0.92253 0.89692 0.95974 0.95169 0.92860 0.75620 0.75380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.99 37.16 0.33 -2.00 15 2 C 0.00 -0.04 2.81 -91.77 -0.26 -0.30 15 3 H 0.10 2.03 8.14 -51.93 -0.42 1.60 15 4 C 0.03 0.69 4.43 -27.88 -0.12 0.57 15 5 C -0.52 -13.66 8.41 -34.44 -0.29 -13.95 15 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 15 7 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 8 N -0.89 -25.98 13.29 55.43 0.74 -25.25 15 9 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 15 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 13 C 0.24 4.79 7.01 -12.99 -0.09 4.70 15 14 N -0.53 -10.27 11.57 -12.68 -0.15 -10.42 15 15 C 0.42 7.36 9.49 -321.18 -3.05 4.31 15 16 N -0.82 -10.01 9.09 28.98 0.26 -9.75 15 17 N -0.45 -8.79 12.20 28.63 0.35 -8.44 15 18 O 0.06 1.21 11.29 18.10 0.20 1.42 15 19 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 20 H 0.06 1.02 8.14 -51.93 -0.42 0.60 15 21 H 0.08 1.48 6.95 -51.93 -0.36 1.12 15 22 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 15 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 25 H 0.41 4.00 8.95 -40.82 -0.37 3.63 15 26 H 0.42 4.10 8.95 -40.82 -0.37 3.73 15 LS Contribution 235.82 15.07 3.55 3.55 Total: -1.00 -30.53 235.82 -6.34 -36.87 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -2.71 Total: 1.42 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -3.57 Total: -5.15 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 1.20 Total: -53.86 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.20 Total: 1.42 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -30.53 -6.34 -36.87 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235094286.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.805 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds