Wall clock time and date at job start Mon Mar 30 2020 02:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09006 * 109.46769 * 2 1 4 4 C 1.50700 * 109.47305 * 240.00127 * 2 1 3 5 5 H 1.07997 * 119.99688 * 275.01336 * 4 2 1 6 6 C 1.37877 * 119.99662 * 95.01065 * 4 2 1 7 7 N 1.31518 * 119.99371 * 184.88126 * 6 4 2 8 8 Si 1.86790 * 120.00474 * 4.88075 * 6 4 2 9 9 H 1.48503 * 109.47239 * 84.75887 * 8 6 4 10 10 H 1.48496 * 109.47424 * 204.75748 * 8 6 4 11 11 H 1.48503 * 109.47178 * 324.76127 * 8 6 4 12 12 C 1.52998 * 109.47080 * 119.99664 * 2 1 3 13 13 C 1.50694 * 109.47416 * 295.00303 * 12 2 1 14 14 N 1.31049 * 126.46449 * 89.99873 * 13 12 2 15 15 C 1.35022 * 105.59430 * 179.97438 * 14 13 12 16 16 N 1.38841 * 126.38383 * 179.97438 * 15 14 13 17 17 N 1.30628 * 107.22300 * 0.02562 * 15 14 13 18 18 O 1.21294 * 110.12913 * 359.97438 * 17 15 14 19 19 H 1.09001 * 109.47076 * 295.27771 * 1 2 3 20 20 H 1.08998 * 109.46590 * 55.27594 * 1 2 3 21 21 H 1.08994 * 109.46873 * 175.27523 * 1 2 3 22 22 H 0.97000 * 119.99937 * 180.02562 * 7 6 4 23 23 H 1.08996 * 109.47409 * 175.00047 * 12 2 1 24 24 H 1.09004 * 109.46725 * 55.00146 * 12 2 1 25 25 H 0.96990 * 120.00422 * 0.02562 * 16 15 14 26 26 H 0.97009 * 119.99367 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3606 0.0123 -2.3579 7 7 2.7069 -0.6130 -3.4619 8 14 2.3132 1.8791 -2.3175 9 1 3.5976 2.3954 -1.7800 10 1 2.1076 2.3990 -3.6932 11 1 1.1966 2.3272 -1.4469 12 6 2.0401 -0.7212 1.2493 13 6 1.6414 0.0571 2.4766 14 7 0.5348 -0.0856 3.1639 15 6 0.6122 0.8142 4.1675 16 7 -0.3386 1.0292 5.1562 17 7 1.7480 1.4456 4.0341 18 8 2.3497 1.0229 3.0695 19 1 -0.3633 0.4388 0.9293 20 1 -0.3632 0.5854 -0.8447 21 1 -0.3633 -1.0241 -0.0846 22 1 2.9382 -0.1047 -4.2550 23 1 3.1263 -0.7994 1.2057 24 1 1.6054 -1.7197 1.2952 25 1 -1.1542 0.5045 5.1670 26 1 -0.1870 1.7042 5.8362 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235400730.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:21 Heat of formation + Delta-G solvation = 60.759318 kcal Electronic energy + Delta-G solvation = -12358.875033 eV Core-core repulsion = 10054.786921 eV Total energy + Delta-G solvation = -2304.088112 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -44.88908 -36.22262 -35.72789 -33.29120 -31.84050 -30.50685 -26.98066 -25.22573 -23.30640 -21.92712 -19.62971 -17.71946 -17.44818 -17.07986 -16.32020 -15.49362 -14.44502 -14.09882 -13.07669 -12.79237 -12.43030 -12.32009 -12.20067 -11.52279 -11.02630 -10.72204 -10.57851 -10.50805 -10.09741 -9.77941 -9.62410 -9.12107 -8.60060 -8.39576 -6.14095 -4.14978 1.70731 2.86622 3.13082 3.28012 3.36376 3.39284 3.47548 4.38166 4.42676 5.19135 5.32392 5.85013 5.87599 6.06596 6.34204 6.37416 6.55790 6.73344 6.83148 7.14177 7.16765 7.36287 7.43865 7.66317 8.41536 8.80338 8.89333 9.48012 10.98541 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.059525 B = 0.009585 C = 0.009248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.274438 B = 2920.506721 C = 3026.802688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.016 3.984 3 H 0.035 0.965 4 C -0.514 4.514 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.896 5.896 8 Si 0.873 3.127 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.266 1.266 12 C -0.023 4.023 13 C 0.231 3.769 14 N -0.521 5.521 15 C 0.417 3.583 16 N -0.820 5.820 17 N -0.453 5.453 18 O 0.051 5.949 19 H 0.026 0.974 20 H 0.042 0.958 21 H 0.050 0.950 22 H 0.265 0.735 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.416 0.584 26 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 2.617 12.451 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.004 4.004 3 H 0.054 0.946 4 C -0.552 4.552 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.190 1.190 12 C -0.062 4.062 13 C 0.012 3.988 14 N -0.262 5.262 15 C 0.053 3.947 16 N -0.379 5.379 17 N -0.185 5.185 18 O 0.008 5.992 19 H 0.045 0.955 20 H 0.061 0.939 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.118 0.882 24 H 0.120 0.880 25 H 0.247 0.753 26 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.748 3.046 12.737 13.622 hybrid contribution -0.344 1.064 0.121 1.124 sum -4.092 4.110 12.858 14.105 Atomic orbital electron populations 1.22034 0.98188 1.00895 0.98661 1.19185 0.93166 0.96157 0.91888 0.94633 1.20828 1.44176 0.95537 0.94625 0.90311 1.25003 0.94201 0.98239 0.95221 1.69889 1.45758 1.35942 1.01702 0.86914 0.79326 0.86462 0.77243 1.19828 1.21459 1.19049 1.20819 1.03072 0.97430 0.84865 1.29317 0.85205 0.88340 0.95956 1.71916 1.22475 1.24563 1.07244 1.22162 0.89845 0.91240 0.91416 1.40664 1.20822 1.46384 1.30041 1.74750 1.09429 1.25686 1.08609 1.85237 1.41669 1.42044 1.30211 0.95490 0.93875 0.93104 0.92466 0.88243 0.87960 0.75304 0.75624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.06 37.16 0.34 -2.64 15 2 C 0.02 0.36 1.95 -91.77 -0.18 0.18 15 3 H 0.04 0.82 5.30 -51.93 -0.28 0.54 15 4 C -0.51 -13.47 8.86 -34.44 -0.31 -13.78 15 5 H 0.08 2.20 8.06 -52.49 -0.42 1.78 15 6 C 0.08 2.09 5.47 -17.82 -0.10 2.00 15 7 N -0.90 -26.34 13.96 55.43 0.77 -25.57 15 8 Si 0.87 21.04 26.99 -169.99 -4.59 16.45 15 9 H -0.27 -6.44 7.11 56.52 0.40 -6.04 15 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 11 H -0.27 -6.26 6.82 56.52 0.39 -5.87 15 12 C -0.02 -0.42 5.30 -27.89 -0.15 -0.57 15 13 C 0.23 4.28 6.96 -12.99 -0.09 4.19 15 14 N -0.52 -9.45 10.75 -12.67 -0.14 -9.59 15 15 C 0.42 6.96 9.49 -321.19 -3.05 3.91 15 16 N -0.82 -9.43 9.09 28.99 0.26 -9.17 15 17 N -0.45 -8.27 12.20 28.63 0.35 -7.92 15 18 O 0.05 0.96 11.29 18.09 0.20 1.16 15 19 H 0.03 0.54 6.60 -51.93 -0.34 0.19 15 20 H 0.04 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.05 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.27 7.36 8.31 -40.82 -0.34 7.02 15 23 H 0.10 1.71 8.14 -51.93 -0.42 1.29 15 24 H 0.10 1.79 8.14 -51.93 -0.42 1.37 15 25 H 0.42 3.88 8.95 -40.82 -0.37 3.51 15 26 H 0.41 3.73 8.95 -40.82 -0.37 3.36 15 LS Contribution 231.15 15.07 3.48 3.48 Total: -1.00 -30.33 231.15 -5.79 -36.12 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -2.61 Total: 1.74 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -3.53 Total: -6.71 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 1.25 Total: -52.25 kcal Atomic # 8 Polarization: 0.96 SS G_CDS: 0.20 Total: 1.16 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.59 Total: 16.45 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.33 -5.79 -36.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235400730.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.880 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds