Wall clock time and date at job start Mon Mar 30 2020 02:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46890 * 120.00210 * 9 7 5 12 12 H 1.48501 * 109.47062 * 240.00257 * 9 7 5 13 13 C 1.50699 * 109.47110 * 119.99564 * 2 1 3 14 14 N 1.31045 * 126.46306 * 240.00293 * 13 2 1 15 15 C 1.35015 * 105.59049 * 179.97438 * 14 13 2 16 16 N 1.38845 * 126.38803 * 180.02562 * 15 14 13 17 17 N 1.30634 * 107.22925 * 0.02562 * 15 14 13 18 18 O 1.21291 * 110.12119 * 359.74608 * 17 15 14 19 19 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 20 20 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 22 22 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 23 23 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 24 24 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 25 25 H 0.97005 * 119.99806 * 359.97438 * 16 15 14 26 26 H 0.97001 * 120.00250 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 2.6765 -1.5188 -3.8510 9 14 1.4997 0.5632 -5.2496 10 1 0.7432 1.7748 -4.8434 11 1 2.7182 0.9680 -5.9958 12 1 0.6460 -0.2857 -6.1189 13 6 2.0324 -0.7103 1.2305 14 7 2.7887 -0.1991 2.1706 15 6 2.9820 -1.1944 3.0622 16 7 3.7247 -1.1189 4.2329 17 7 2.3400 -2.2418 2.6180 18 8 1.7866 -1.9791 1.5712 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.6055 -1.7198 -1.2951 23 1 3.1264 -0.7994 -1.2055 24 1 2.9238 -1.8418 -4.7316 25 1 4.1661 -0.2896 4.4745 26 1 3.8027 -1.8956 4.8087 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235411349.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:25 Heat of formation + Delta-G solvation = 35.039680 kcal Electronic energy + Delta-G solvation = -12220.637137 eV Core-core repulsion = 9915.433738 eV Total energy + Delta-G solvation = -2305.203399 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -46.27015 -37.51035 -37.36970 -34.83193 -33.78051 -31.52680 -28.96199 -26.25011 -24.72499 -24.16009 -21.52229 -18.92335 -18.71456 -18.55590 -17.47355 -16.81214 -16.47123 -15.83677 -14.99503 -14.39690 -13.77916 -13.66872 -13.37899 -13.01571 -12.77150 -12.61209 -12.23005 -12.09697 -11.92782 -11.72634 -11.20061 -11.13333 -10.53390 -9.63080 -8.15317 -6.25793 0.27590 1.47971 1.48492 1.50327 1.61635 1.95650 2.05563 2.47404 3.04707 3.20397 4.01747 4.21459 4.32732 4.45307 4.77575 4.89166 5.08939 5.13141 5.40736 5.45059 5.62844 5.83234 6.06403 6.19566 6.53228 6.88876 7.43420 7.46161 8.97567 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.071190 B = 0.007978 C = 0.007737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.218895 B = 3508.734219 C = 3617.972622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.008 3.992 3 H 0.114 0.886 4 C 0.035 3.965 5 C -0.526 4.526 6 H 0.080 0.920 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.966 3.034 10 H -0.253 1.253 11 H -0.285 1.285 12 H -0.282 1.282 13 C 0.234 3.766 14 N -0.537 5.537 15 C 0.417 3.583 16 N -0.793 5.793 17 N -0.470 5.470 18 O 0.040 5.960 19 H 0.085 0.915 20 H 0.054 0.946 21 H 0.069 0.931 22 H 0.005 0.995 23 H -0.013 1.013 24 H 0.262 0.738 25 H 0.429 0.571 26 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.628 3.546 11.248 11.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.012 4.012 3 H 0.132 0.868 4 C -0.003 4.003 5 C -0.564 4.564 6 H 0.098 0.902 7 C -0.198 4.198 8 N -0.577 5.577 9 Si 0.791 3.209 10 H -0.177 1.177 11 H -0.212 1.212 12 H -0.208 1.208 13 C 0.014 3.986 14 N -0.279 5.279 15 C 0.053 3.947 16 N -0.356 5.356 17 N -0.205 5.205 18 O 0.002 5.998 19 H 0.103 0.897 20 H 0.074 0.926 21 H 0.088 0.912 22 H 0.023 0.977 23 H 0.006 0.994 24 H 0.071 0.929 25 H 0.263 0.737 26 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -1.435 2.995 11.603 12.069 hybrid contribution 0.418 0.008 -0.655 0.777 sum -1.017 3.004 10.948 11.398 Atomic orbital electron populations 1.21734 0.90785 1.02823 1.03271 1.20153 0.98306 0.98379 0.84412 0.86849 1.19047 0.94598 0.95484 0.91148 1.21552 1.35041 1.09004 0.90814 0.90202 1.25959 0.95029 0.95961 1.02826 1.70128 1.40056 1.23052 1.24416 0.85375 0.77869 0.79011 0.78655 1.17667 1.21151 1.20842 1.29198 0.90536 0.82259 0.96629 1.71862 1.21728 1.29511 1.04797 1.22480 0.94586 0.85644 0.92038 1.40735 1.56198 1.19562 1.19075 1.74738 1.21504 1.22658 1.01649 1.85210 1.55605 1.29600 1.29398 0.89664 0.92637 0.91246 0.97684 0.99416 0.92902 0.73744 0.73903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 8.99 71.98 0.65 -3.59 15 2 C 0.01 0.31 2.81 -11.54 -0.03 0.28 15 3 H 0.11 4.25 8.14 -2.39 -0.02 4.23 15 4 C 0.04 1.77 4.43 29.85 0.13 1.91 15 5 C -0.53 -27.54 8.41 25.60 0.22 -27.33 15 6 H 0.08 3.83 7.06 -2.91 -0.02 3.81 15 7 C 0.00 0.00 5.46 84.66 0.46 0.46 15 8 N -0.94 -55.73 13.29 21.45 0.28 -55.45 15 9 Si 0.97 42.26 29.54 68.60 2.03 44.29 15 10 H -0.25 -10.25 7.11 99.48 0.71 -9.54 15 11 H -0.29 -12.46 7.11 99.48 0.71 -11.75 15 12 H -0.28 -12.22 7.11 99.48 0.71 -11.52 15 13 C 0.23 9.24 7.01 88.36 0.62 9.86 15 14 N -0.54 -20.15 11.57 -311.45 -3.60 -23.75 15 15 C 0.42 14.14 9.49 260.92 2.48 16.61 15 16 N -0.79 -17.38 9.09 -65.02 -0.59 -17.97 15 17 N -0.47 -17.99 12.20 -66.70 -0.81 -18.81 15 18 O 0.04 1.65 11.29 74.80 0.84 2.49 15 19 H 0.08 2.81 6.95 -2.39 -0.02 2.79 15 20 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 21 H 0.07 1.90 8.14 -2.39 -0.02 1.88 15 22 H 0.00 0.26 8.14 -2.39 -0.02 0.24 15 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 15 24 H 0.26 14.73 8.31 -92.71 -0.77 13.96 15 25 H 0.43 7.22 8.95 -92.70 -0.83 6.39 15 26 H 0.43 7.11 8.95 -92.71 -0.83 6.28 15 Total: -1.00 -65.33 235.82 2.22 -63.10 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -0.44 Total: 7.89 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 4.52 Total: -1.80 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -4.72 Total: -115.98 kcal Atomic # 8 Polarization: 1.65 SS G_CDS: 0.84 Total: 2.49 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -65.33 2.22 -63.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411349.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.143 kcal (2) G-P(sol) polarization free energy of solvation -65.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds