Wall clock time and date at job start Mon Mar 30 2020 01:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36181 * 116.99732 * 2 1 4 4 C 1.41631 * 126.62066 * 0.18404 * 3 2 1 5 5 C 1.34519 * 106.86705 * 180.25864 * 4 3 2 6 6 O 1.34274 * 108.52067 * 359.74452 * 5 4 3 7 7 C 1.34578 * 109.50432 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.82751 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46613 * 195.02516 * 8 7 6 10 10 N 1.46906 * 109.46982 * 315.02302 * 8 7 6 11 11 C 1.50698 * 109.47576 * 75.02549 * 8 7 6 12 12 H 1.08004 * 119.99528 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00356 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00020 * 179.97438 * 13 11 8 15 15 Si 1.86803 * 119.99603 * 359.97438 * 13 11 8 16 16 H 1.48495 * 109.47195 * 90.00782 * 15 13 11 17 17 H 1.48502 * 109.46875 * 210.00223 * 15 13 11 18 18 H 1.48493 * 109.47388 * 330.00132 * 15 13 11 19 19 H 1.08996 * 109.47086 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46656 * 299.98979 * 1 2 3 21 21 H 1.08991 * 109.47642 * 59.99383 * 1 2 3 22 22 H 1.08002 * 126.56805 * 359.97438 * 4 3 2 23 23 H 1.07999 * 125.74122 * 179.75581 * 5 4 3 24 24 H 1.00896 * 111.00309 * 60.00059 * 10 8 7 25 25 H 1.00902 * 110.99923 * 183.96223 * 10 8 7 26 26 H 0.97000 * 119.99684 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2134 0.0000 4 6 1.4179 2.4822 0.0037 5 6 2.3977 3.4039 -0.0036 6 8 3.5807 2.7688 -0.0058 7 6 3.3766 1.4386 -0.0005 8 6 4.4504 0.3814 -0.0003 9 1 4.0121 -0.5817 -0.2619 10 7 5.4836 0.7326 -0.9838 11 6 5.0704 0.2952 1.3706 12 1 4.7219 0.9418 2.1624 13 6 6.0832 -0.6082 1.6137 14 7 6.6246 -0.6829 2.8099 15 14 6.6864 -1.7259 0.2439 16 1 7.7936 -1.0594 -0.4875 17 1 7.1749 -3.0021 0.8254 18 1 5.5703 -2.0050 -0.6949 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8898 22 1 0.3549 2.6732 0.0066 23 1 2.2565 4.4746 -0.0070 24 1 5.9054 1.6222 -0.7631 25 1 6.1821 0.0074 -1.0491 26 1 7.3368 -1.3188 2.9810 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238388112.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:51 Heat of formation + Delta-G solvation = -14.410709 kcal Electronic energy + Delta-G solvation = -12559.566118 eV Core-core repulsion = 10219.925638 eV Total energy + Delta-G solvation = -2339.640480 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.91107 -37.77265 -34.97922 -31.80160 -31.58108 -28.99225 -26.65778 -25.79692 -22.51418 -20.86100 -19.80666 -17.40932 -17.04322 -15.78079 -15.33584 -14.82497 -14.71824 -14.45257 -14.12121 -13.43465 -12.74515 -12.42599 -11.77887 -11.67853 -11.26649 -11.09325 -10.82805 -10.64160 -10.32404 -9.59707 -8.84188 -8.76382 -7.75799 -7.15129 -6.21624 -4.25319 2.40527 3.15691 3.25948 3.29908 3.31534 3.59303 4.04801 4.24867 5.06482 5.17752 5.42052 5.48060 5.53291 5.71030 5.85009 6.00249 6.28420 6.63039 6.72083 7.01700 7.38196 7.67347 8.04218 8.12083 8.28336 8.48756 8.84736 9.35645 10.91076 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.041188 B = 0.012398 C = 0.011274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.649385 B = 2257.965902 C = 2483.101409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.296 6.296 3 C -0.013 4.013 4 C -0.261 4.261 5 C -0.047 4.047 6 O -0.154 6.154 7 C 0.040 3.960 8 C 0.256 3.744 9 H 0.074 0.926 10 N -0.849 5.849 11 C -0.547 4.547 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.888 5.888 15 Si 0.871 3.129 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.257 1.257 19 H 0.091 0.909 20 H 0.045 0.955 21 H 0.043 0.957 22 H 0.142 0.858 23 H 0.197 0.803 24 H 0.337 0.663 25 H 0.320 0.680 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.973 3.850 -6.207 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.211 6.211 3 C -0.058 4.058 4 C -0.281 4.281 5 C -0.115 4.115 6 O -0.049 6.049 7 C -0.012 4.012 8 C 0.147 3.853 9 H 0.091 0.909 10 N -0.383 5.383 11 C -0.587 4.587 12 H 0.095 0.905 13 C -0.129 4.129 14 N -0.525 5.525 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.215 1.215 18 H -0.181 1.181 19 H 0.110 0.890 20 H 0.064 0.936 21 H 0.062 0.938 22 H 0.160 0.840 23 H 0.214 0.786 24 H 0.148 0.852 25 H 0.136 0.864 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.064 3.674 -6.626 11.814 hybrid contribution 0.430 -0.454 0.381 0.733 sum -8.634 3.220 -6.245 11.132 Atomic orbital electron populations 1.22839 0.79741 1.02837 1.00319 1.86064 1.19754 1.24162 1.91079 1.18583 0.91707 0.84915 1.10603 1.21648 1.00190 0.92310 1.13976 1.23571 0.82441 0.98118 1.07404 1.84162 1.31545 1.18133 1.71105 1.21961 0.93408 0.81160 1.04639 1.18084 0.86487 0.89392 0.91324 0.90890 1.59656 1.17983 1.07297 1.53353 1.21600 1.18971 1.22093 0.96025 0.90492 1.24982 0.95995 0.96219 0.95728 1.69888 1.25660 1.36191 1.20769 0.87025 0.79928 0.80752 0.82334 1.19937 1.21492 1.18149 0.89032 0.93623 0.93798 0.84032 0.78638 0.85165 0.86357 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.24 101.05 1.03 1.58 15 2 O -0.30 -6.04 10.40 -20.32 -0.21 -6.25 15 3 C -0.01 -0.27 6.95 -39.50 -0.27 -0.55 15 4 C -0.26 -4.53 9.99 -39.60 -0.40 -4.92 15 5 C -0.05 -0.79 12.08 29.42 0.36 -0.43 15 6 O -0.15 -3.29 10.61 5.04 0.05 -3.23 15 7 C 0.04 0.94 6.09 -35.52 -0.22 0.72 15 8 C 0.26 6.52 2.70 -70.02 -0.19 6.33 15 9 H 0.07 1.93 7.02 -51.93 -0.36 1.57 15 10 N -0.85 -19.82 9.14 -6.65 -0.06 -19.88 15 11 C -0.55 -15.83 9.29 -34.44 -0.32 -16.15 15 12 H 0.08 2.45 7.98 -52.48 -0.42 2.04 15 13 C 0.07 2.15 5.47 -17.82 -0.10 2.05 15 14 N -0.89 -27.03 13.96 55.43 0.77 -26.26 15 15 Si 0.87 21.17 24.61 -169.99 -4.18 16.99 15 16 H -0.27 -6.30 7.01 56.52 0.40 -5.90 15 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 18 H -0.26 -6.10 6.54 56.52 0.37 -5.73 15 19 H 0.09 1.06 8.14 -51.93 -0.42 0.64 15 20 H 0.05 0.59 8.11 -51.93 -0.42 0.17 15 21 H 0.04 0.54 8.11 -51.93 -0.42 0.12 15 22 H 0.14 1.95 7.80 -52.49 -0.41 1.54 15 23 H 0.20 2.29 8.06 -52.49 -0.42 1.86 15 24 H 0.34 7.55 8.94 -39.29 -0.35 7.20 15 25 H 0.32 7.40 4.30 -39.29 -0.17 7.23 15 26 H 0.27 7.56 8.31 -40.82 -0.34 7.23 15 LS Contribution 228.95 15.07 3.45 3.45 Total: -1.00 -32.32 228.95 -2.85 -35.17 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -2.57 Total: 11.38 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: -0.10 Total: -11.37 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.71 Total: -46.13 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.16 Total: -9.48 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.18 Total: 16.99 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -32.32 -2.85 -35.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238388112.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.759 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds