Wall clock time and date at job start Mon Mar 30 2020 01:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36181 * 116.99732 * 2 1 4 4 C 1.41631 * 126.62066 * 0.18404 * 3 2 1 5 5 C 1.34519 * 106.86705 * 180.25864 * 4 3 2 6 6 O 1.34274 * 108.52067 * 359.74452 * 5 4 3 7 7 C 1.34578 * 109.50432 * 0.02562 * 6 5 4 8 8 C 1.50697 * 125.82751 * 180.02562 * 7 6 5 9 9 H 1.09001 * 109.46613 * 195.02516 * 8 7 6 10 10 N 1.46906 * 109.46982 * 315.02302 * 8 7 6 11 11 C 1.50698 * 109.47576 * 75.02549 * 8 7 6 12 12 H 1.08004 * 119.99528 * 359.97438 * 11 8 7 13 13 C 1.37876 * 120.00356 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00020 * 179.97438 * 13 11 8 15 15 Si 1.86803 * 119.99603 * 359.97438 * 13 11 8 16 16 H 1.48495 * 109.47195 * 90.00782 * 15 13 11 17 17 H 1.48502 * 109.46875 * 210.00223 * 15 13 11 18 18 H 1.48493 * 109.47388 * 330.00132 * 15 13 11 19 19 H 1.08996 * 109.47086 * 179.97438 * 1 2 3 20 20 H 1.09002 * 109.46656 * 299.98979 * 1 2 3 21 21 H 1.08991 * 109.47642 * 59.99383 * 1 2 3 22 22 H 1.08002 * 126.56805 * 359.97438 * 4 3 2 23 23 H 1.07999 * 125.74122 * 179.75581 * 5 4 3 24 24 H 1.00896 * 111.00309 * 60.00059 * 10 8 7 25 25 H 1.00902 * 110.99923 * 183.96223 * 10 8 7 26 26 H 0.97000 * 119.99684 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0472 1.2134 0.0000 4 6 1.4179 2.4822 0.0037 5 6 2.3977 3.4039 -0.0036 6 8 3.5807 2.7688 -0.0058 7 6 3.3766 1.4386 -0.0005 8 6 4.4504 0.3814 -0.0003 9 1 4.0121 -0.5817 -0.2619 10 7 5.4836 0.7326 -0.9838 11 6 5.0704 0.2952 1.3706 12 1 4.7219 0.9418 2.1624 13 6 6.0832 -0.6082 1.6137 14 7 6.6246 -0.6829 2.8099 15 14 6.6864 -1.7259 0.2439 16 1 7.7936 -1.0594 -0.4875 17 1 7.1749 -3.0021 0.8254 18 1 5.5703 -2.0050 -0.6949 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8898 22 1 0.3549 2.6732 0.0066 23 1 2.2565 4.4746 -0.0070 24 1 5.9054 1.6222 -0.7631 25 1 6.1821 0.0074 -1.0491 26 1 7.3368 -1.3188 2.9810 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238388112.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:50 Heat of formation + Delta-G solvation = -40.982573 kcal Electronic energy + Delta-G solvation = -12560.718361 eV Core-core repulsion = 10219.925638 eV Total energy + Delta-G solvation = -2340.792722 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.41031 -39.22396 -36.94902 -33.96454 -33.03568 -30.52500 -28.23583 -27.52657 -24.34437 -22.31006 -21.42126 -19.20299 -18.88792 -17.49318 -16.99672 -16.34983 -16.28688 -15.95371 -15.84118 -15.09101 -14.53532 -14.03301 -13.70052 -13.29803 -12.85774 -12.71444 -12.37202 -12.25169 -12.18027 -11.69492 -10.94592 -10.21471 -9.64574 -8.80271 -8.43645 -6.54016 0.93752 1.22909 1.31459 1.41698 1.75954 2.14899 2.19508 2.70236 2.89464 3.73312 3.99823 4.25329 4.41602 4.44888 4.45732 4.72163 4.74211 4.98927 5.16662 5.32155 5.47053 5.92126 6.18439 6.31893 6.47417 6.59389 6.66922 7.11578 8.72677 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.041188 B = 0.012398 C = 0.011274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.649385 B = 2257.965902 C = 2483.101409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.329 6.329 3 C -0.011 4.011 4 C -0.266 4.266 5 C -0.027 4.027 6 O -0.175 6.175 7 C -0.024 4.024 8 C 0.266 3.734 9 H 0.058 0.942 10 N -0.837 5.837 11 C -0.556 4.556 12 H 0.027 0.973 13 C 0.020 3.980 14 N -0.935 5.935 15 Si 0.940 3.060 16 H -0.248 1.248 17 H -0.284 1.284 18 H -0.249 1.249 19 H 0.114 0.886 20 H 0.057 0.943 21 H 0.065 0.935 22 H 0.181 0.819 23 H 0.251 0.749 24 H 0.341 0.659 25 H 0.321 0.679 26 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.196 4.392 -7.858 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.245 6.245 3 C -0.056 4.056 4 C -0.285 4.285 5 C -0.094 4.094 6 O -0.072 6.072 7 C -0.075 4.075 8 C 0.156 3.844 9 H 0.076 0.924 10 N -0.370 5.370 11 C -0.596 4.596 12 H 0.046 0.954 13 C -0.180 4.180 14 N -0.573 5.573 15 Si 0.763 3.237 16 H -0.172 1.172 17 H -0.210 1.210 18 H -0.173 1.173 19 H 0.132 0.868 20 H 0.075 0.925 21 H 0.083 0.917 22 H 0.199 0.801 23 H 0.266 0.734 24 H 0.153 0.847 25 H 0.137 0.863 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.304 4.228 -8.287 13.882 hybrid contribution 0.644 -0.519 0.967 1.273 sum -9.660 3.709 -7.320 12.674 Atomic orbital electron populations 1.23223 0.76551 1.04985 1.01861 1.86015 1.23171 1.24441 1.90849 1.18973 0.91615 0.86618 1.08424 1.22046 1.02249 0.90315 1.13909 1.24749 0.80831 1.00276 1.03561 1.84109 1.33767 1.17417 1.71876 1.21593 0.93930 0.81971 1.10002 1.17681 0.87290 0.90192 0.89214 0.92410 1.59604 1.17714 1.07486 1.52204 1.21777 1.19519 1.21410 0.96898 0.95443 1.25902 0.95926 0.97726 0.98451 1.70034 1.26596 1.37457 1.23234 0.85926 0.80123 0.78500 0.79107 1.17245 1.21011 1.17313 0.86806 0.92470 0.91678 0.80121 0.73353 0.84690 0.86282 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.24 113.37 1.16 1.89 15 2 O -0.33 -13.21 10.40 -95.61 -0.99 -14.21 15 3 C -0.01 -0.44 6.95 22.32 0.16 -0.29 15 4 C -0.27 -8.41 9.99 22.26 0.22 -8.19 15 5 C -0.03 -0.82 12.08 66.97 0.81 -0.01 15 6 O -0.18 -7.37 10.61 -4.89 -0.05 -7.42 15 7 C -0.02 -1.15 6.09 24.90 0.15 -1.00 15 8 C 0.27 13.80 2.70 43.42 0.12 13.91 15 9 H 0.06 3.12 7.02 -2.39 -0.02 3.11 15 10 N -0.84 -38.76 9.14 -174.95 -1.60 -40.36 15 11 C -0.56 -33.50 9.29 25.60 0.24 -33.26 15 12 H 0.03 1.86 7.98 -2.91 -0.02 1.83 15 13 C 0.02 1.16 5.47 84.65 0.46 1.62 15 14 N -0.93 -58.60 13.96 21.45 0.30 -58.31 15 15 Si 0.94 43.88 24.61 68.60 1.69 45.57 15 16 H -0.25 -10.52 7.01 99.48 0.70 -9.83 15 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 15 18 H -0.25 -11.25 6.54 99.48 0.65 -10.60 15 19 H 0.11 2.36 8.14 -2.39 -0.02 2.34 15 20 H 0.06 1.33 8.11 -2.39 -0.02 1.31 15 21 H 0.06 1.39 8.11 -2.39 -0.02 1.37 15 22 H 0.18 4.13 7.80 -2.91 -0.02 4.11 15 23 H 0.25 4.53 8.06 -2.91 -0.02 4.51 15 24 H 0.34 15.29 8.94 -89.70 -0.80 14.49 15 25 H 0.32 14.41 4.30 -89.69 -0.39 14.03 15 26 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 Total: -1.00 -73.30 228.95 2.61 -70.68 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.05 Total: 29.37 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: 3.32 Total: -25.33 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -1.30 Total: -98.66 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -1.05 Total: -21.63 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.69 Total: 45.57 kcal Total: -73.30 2.61 -70.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238388112.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.699 kcal (2) G-P(sol) polarization free energy of solvation -73.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds