Wall clock time and date at job start Mon Mar 30 2020 01:48:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36176 * 116.99685 * 2 1 4 4 C 1.41637 * 126.62152 * 0.02562 * 3 2 1 5 5 C 1.34516 * 106.86806 * 179.97438 * 4 3 2 6 6 O 1.34268 * 108.52065 * 0.02562 * 5 4 3 7 7 C 1.34570 * 109.50784 * 359.72840 * 6 5 4 8 8 C 1.50698 * 125.83312 * 180.29428 * 7 6 5 9 9 H 1.08998 * 109.47409 * 165.16943 * 8 7 6 10 10 N 1.46894 * 109.47209 * 45.16927 * 8 7 6 11 11 C 1.50707 * 109.47293 * 285.16785 * 8 7 6 12 12 H 1.07998 * 119.99798 * 0.02562 * 11 8 7 13 13 C 1.37877 * 120.00173 * 179.97438 * 11 8 7 14 14 N 1.31518 * 119.99934 * 359.97438 * 13 11 8 15 15 Si 1.86796 * 120.00072 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47172 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47507 * 119.99865 * 15 13 11 18 18 H 1.48501 * 109.47057 * 240.00021 * 15 13 11 19 19 H 1.09001 * 109.47103 * 60.00558 * 1 2 3 20 20 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47187 * 300.00117 * 1 2 3 22 22 H 1.08002 * 126.56190 * 0.02562 * 4 3 2 23 23 H 1.08007 * 125.74118 * 180.02562 * 5 4 3 24 24 H 1.00904 * 111.00269 * 176.04859 * 10 8 7 25 25 H 1.00902 * 110.99901 * 299.99898 * 10 8 7 26 26 H 0.96998 * 119.99675 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0472 1.2134 0.0000 4 6 1.4179 2.4822 0.0005 5 6 2.3976 3.4039 0.0009 6 8 3.5806 2.7688 0.0001 7 6 3.3766 1.4387 0.0052 8 6 4.4504 0.3814 0.0124 9 1 4.0117 -0.5803 0.2783 10 7 5.4819 0.7378 0.9956 11 6 5.0727 0.2881 -1.3571 12 1 4.7256 0.9304 -2.1528 13 6 6.0859 -0.6166 -1.5937 14 7 6.5096 -1.3978 -0.6242 15 14 6.8576 -0.7318 -3.2909 16 1 6.2078 0.2482 -4.1977 17 1 8.3090 -0.4323 -3.1961 18 1 6.6693 -2.1033 -3.8282 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 0.3548 2.6731 0.0014 23 1 2.2565 4.4747 0.0017 24 1 6.1804 0.0130 1.0659 25 1 5.9041 1.6262 0.7709 26 1 7.2226 -2.0340 -0.7906 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238388295.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:52 Heat of formation + Delta-G solvation = -48.985164 kcal Electronic energy + Delta-G solvation = -12511.771739 eV Core-core repulsion = 10170.631998 eV Total energy + Delta-G solvation = -2341.139741 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.35384 -39.18616 -36.68722 -33.39334 -32.98699 -30.28637 -28.11572 -27.44584 -24.34084 -22.23969 -21.41033 -18.90791 -18.63182 -17.08130 -16.95964 -16.29467 -16.11663 -15.83844 -15.73902 -14.75515 -14.58850 -13.79997 -13.32762 -13.10017 -12.87241 -12.67455 -12.34862 -12.33231 -11.99206 -11.83611 -10.77508 -10.18613 -9.35891 -8.81564 -8.13955 -6.43251 0.98963 1.36473 1.37931 1.50569 1.80540 2.20563 2.37014 2.76718 3.01377 3.87543 4.18397 4.43921 4.45177 4.48717 4.60329 4.71744 4.88213 5.20955 5.31206 5.56104 5.58982 5.92043 6.28266 6.54547 6.70418 6.82533 7.04828 7.32235 8.79241 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.039649 B = 0.011431 C = 0.010696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.029706 B = 2448.843073 C = 2617.056674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.331 6.331 3 C -0.020 4.020 4 C -0.265 4.265 5 C -0.032 4.032 6 O -0.175 6.175 7 C -0.023 4.023 8 C 0.292 3.708 9 H 0.030 0.970 10 N -0.841 5.841 11 C -0.565 4.565 12 H 0.043 0.957 13 C 0.022 3.978 14 N -0.915 5.915 15 Si 0.968 3.032 16 H -0.274 1.274 17 H -0.271 1.271 18 H -0.275 1.275 19 H 0.059 0.941 20 H 0.112 0.888 21 H 0.062 0.938 22 H 0.180 0.820 23 H 0.250 0.750 24 H 0.350 0.650 25 H 0.321 0.679 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.292 6.575 -0.010 11.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.247 6.247 3 C -0.066 4.066 4 C -0.285 4.285 5 C -0.100 4.100 6 O -0.072 6.072 7 C -0.074 4.074 8 C 0.182 3.818 9 H 0.048 0.952 10 N -0.370 5.370 11 C -0.605 4.605 12 H 0.062 0.938 13 C -0.178 4.178 14 N -0.554 5.554 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.197 1.197 18 H -0.201 1.201 19 H 0.077 0.923 20 H 0.130 0.870 21 H 0.080 0.920 22 H 0.197 0.803 23 H 0.266 0.734 24 H 0.165 0.835 25 H 0.130 0.870 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.409 6.345 0.585 11.364 hybrid contribution 0.630 -0.349 -1.579 1.736 sum -8.780 5.996 -0.994 10.678 Atomic orbital electron populations 1.23200 0.76742 1.04817 1.01785 1.86038 1.23022 1.24649 1.90974 1.19012 0.91770 0.86478 1.09293 1.22031 1.02145 0.90368 1.13927 1.24723 0.80945 1.00209 1.04081 1.84114 1.33669 1.17546 1.71851 1.22193 0.94509 0.81969 1.08712 1.17236 0.86557 0.87755 0.90233 0.95173 1.59415 1.19344 1.07568 1.50716 1.21998 1.19732 1.21345 0.97413 0.93820 1.25792 0.96687 0.93990 1.01334 1.69841 1.28950 1.23024 1.33630 0.85366 0.78226 0.78005 0.79155 1.19861 1.19655 1.20084 0.92267 0.87016 0.91970 0.80282 0.73395 0.83498 0.86967 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.24 113.37 1.16 1.96 15 2 O -0.33 -14.15 10.40 -95.56 -0.99 -15.15 15 3 C -0.02 -0.88 6.95 22.33 0.16 -0.72 15 4 C -0.27 -8.75 9.99 22.26 0.22 -8.53 15 5 C -0.03 -1.02 12.08 66.97 0.81 -0.21 15 6 O -0.18 -7.60 10.61 -4.76 -0.05 -7.65 15 7 C -0.02 -1.14 6.09 24.90 0.15 -0.99 15 8 C 0.29 16.40 3.17 43.43 0.14 16.54 15 9 H 0.03 1.90 7.97 -2.39 -0.02 1.88 15 10 N -0.84 -44.25 9.18 -174.96 -1.61 -45.85 15 11 C -0.57 -33.02 8.71 25.60 0.22 -32.79 15 12 H 0.04 2.60 7.74 -2.91 -0.02 2.57 15 13 C 0.02 1.26 5.38 84.65 0.46 1.71 15 14 N -0.92 -52.41 11.54 21.45 0.25 -52.16 15 15 Si 0.97 44.26 29.54 68.60 2.03 46.28 15 16 H -0.27 -12.47 7.11 99.48 0.71 -11.77 15 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 15 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 15 19 H 0.06 1.43 8.11 -2.39 -0.02 1.41 15 20 H 0.11 2.53 8.14 -2.38 -0.02 2.51 15 21 H 0.06 1.46 8.11 -2.39 -0.02 1.44 15 22 H 0.18 4.32 7.80 -2.91 -0.02 4.30 15 23 H 0.25 4.71 8.06 -2.91 -0.02 4.68 15 24 H 0.35 19.14 7.08 -89.69 -0.63 18.51 15 25 H 0.32 16.15 8.94 -89.69 -0.80 15.34 15 26 H 0.27 14.52 8.31 -92.71 -0.77 13.75 15 Total: -1.00 -68.32 235.45 2.71 -65.61 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -0.23 Total: 31.95 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.32 Total: -23.04 kcal Atomic # 7 Polarization: -96.65 SS G_CDS: -1.36 Total: -98.01 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -1.04 Total: -22.80 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -68.32 2.71 -65.61 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238388295.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.627 kcal (2) G-P(sol) polarization free energy of solvation -68.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds