Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35768 * 117.00166 * 2 1 4 4 O 1.34331 * 125.83814 * 359.97438 * 3 2 1 5 5 C 1.34580 * 109.47379 * 180.02562 * 4 3 2 6 6 C 1.34448 * 108.51668 * 359.72062 * 5 4 3 7 7 C 1.35131 * 125.84208 * 180.02562 * 3 2 1 8 8 C 1.50698 * 126.60517 * 359.97438 * 7 3 2 9 9 H 1.09001 * 109.46875 * 40.00070 * 8 7 3 10 10 N 1.46895 * 109.47244 * 160.00020 * 8 7 3 11 11 C 1.50697 * 109.46993 * 280.00391 * 8 7 3 12 12 H 1.07991 * 120.00449 * 359.72131 * 11 8 7 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 8 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 H 1.08999 * 109.47020 * 59.99705 * 1 2 3 20 20 H 1.09003 * 109.47040 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46960 * 299.99519 * 1 2 3 22 22 H 1.07994 * 125.73944 * 180.02562 * 5 4 3 23 23 H 1.07995 * 126.55083 * 180.25947 * 6 5 4 24 24 H 1.00904 * 110.99999 * 59.99756 * 10 8 7 25 25 H 1.00895 * 111.00220 * 183.95559 * 10 8 7 26 26 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 8 1.4322 2.4049 -0.0005 5 6 2.3563 3.3832 -0.0009 6 6 3.5763 2.8183 0.0056 7 6 3.3807 1.4174 -0.0005 8 6 4.4545 0.3601 -0.0006 9 1 4.1609 -0.4559 -0.6609 10 7 5.7164 0.9438 -0.4748 11 6 4.6398 -0.1679 1.3987 12 1 4.0431 0.2262 2.2079 13 6 5.5748 -1.1505 1.6466 14 7 6.3011 -1.6308 0.6610 15 14 5.8098 -1.7994 3.3824 16 1 4.5351 -2.3863 3.8683 17 1 6.8671 -2.8423 3.3819 18 1 6.2145 -0.6852 4.2768 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.1522 4.4437 -0.0009 23 1 4.5245 3.3352 0.0109 24 1 6.0100 1.7032 0.1212 25 1 6.4362 0.2403 -0.5454 26 1 6.9586 -2.3223 0.8353 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238441045.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = -24.107670 kcal Electronic energy + Delta-G solvation = -12544.131423 eV Core-core repulsion = 10204.070452 eV Total energy + Delta-G solvation = -2340.060972 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.85998 -37.66831 -35.01111 -32.18339 -30.32579 -28.68563 -26.43797 -25.60544 -22.55072 -20.63915 -19.49687 -17.65432 -16.53938 -15.91638 -15.33797 -14.76982 -14.40477 -14.21515 -13.64159 -12.80909 -12.49517 -12.12908 -11.60706 -11.30848 -11.14094 -10.96011 -10.81194 -10.63719 -10.02517 -9.63342 -8.87058 -8.48612 -7.25172 -6.95743 -5.95111 -4.10614 2.51315 3.20514 3.30843 3.35025 3.37767 3.58655 4.05153 4.43938 5.24978 5.37794 5.42985 5.63682 5.71311 5.76876 6.44568 6.48868 6.73336 7.00416 7.25642 7.50625 7.76428 7.86888 8.15206 8.25720 8.82643 9.06940 9.24973 9.59313 11.01720 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.037502 B = 0.012323 C = 0.010718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.448830 B = 2271.669758 C = 2611.723515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.253 6.253 3 C 0.145 3.855 4 O -0.217 6.217 5 C -0.091 4.091 6 C -0.158 4.158 7 C -0.137 4.137 8 C 0.276 3.724 9 H 0.046 0.954 10 N -0.849 5.849 11 C -0.532 4.532 12 H 0.052 0.948 13 C 0.063 3.937 14 N -0.897 5.897 15 Si 0.896 3.104 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.278 1.278 19 H 0.050 0.950 20 H 0.099 0.901 21 H 0.051 0.949 22 H 0.196 0.804 23 H 0.147 0.853 24 H 0.310 0.690 25 H 0.354 0.646 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.727 5.870 -0.647 9.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.167 6.167 3 C 0.053 3.947 4 O -0.119 6.119 5 C -0.156 4.156 6 C -0.177 4.177 7 C -0.140 4.140 8 C 0.166 3.834 9 H 0.064 0.936 10 N -0.378 5.378 11 C -0.572 4.572 12 H 0.070 0.930 13 C -0.138 4.138 14 N -0.537 5.537 15 Si 0.723 3.277 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.204 1.204 19 H 0.069 0.931 20 H 0.117 0.883 21 H 0.070 0.930 22 H 0.213 0.787 23 H 0.165 0.835 24 H 0.119 0.881 25 H 0.170 0.830 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.206 5.735 -1.372 10.105 hybrid contribution 0.331 -0.628 1.994 2.117 sum -7.874 5.107 0.623 9.406 Atomic orbital electron populations 1.22898 0.79254 1.03608 1.01197 1.86608 1.20667 1.18976 1.90471 1.20088 0.89060 0.77631 1.07930 1.83821 1.38321 1.14662 1.75083 1.23400 0.86584 0.91793 1.13796 1.21453 0.97972 0.93553 1.04725 1.20146 0.91130 0.95495 1.07213 1.17264 0.84266 0.87997 0.93880 0.93590 1.59433 1.08297 1.15046 1.54995 1.21820 1.20019 1.20595 0.94781 0.92992 1.25011 0.95819 0.95818 0.97190 1.69743 1.24005 1.29028 1.30962 0.86603 0.77746 0.78527 0.84778 1.20280 1.21248 1.20363 0.93089 0.88288 0.93006 0.78746 0.83515 0.88143 0.82986 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.76 101.05 1.09 1.47 15 2 O -0.25 -5.35 10.52 -42.15 -0.44 -5.79 15 3 C 0.14 3.20 7.82 29.63 0.23 3.43 15 4 O -0.22 -4.17 10.16 -18.26 -0.19 -4.36 15 5 C -0.09 -1.55 12.09 29.39 0.36 -1.19 15 6 C -0.16 -3.13 10.12 -39.70 -0.40 -3.53 15 7 C -0.14 -3.26 5.25 -104.51 -0.55 -3.80 15 8 C 0.28 7.40 3.15 -70.02 -0.22 7.18 15 9 H 0.05 1.38 8.14 -51.93 -0.42 0.96 15 10 N -0.85 -21.20 8.92 -6.65 -0.06 -21.25 15 11 C -0.53 -15.17 8.71 -34.44 -0.30 -15.47 15 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 15 13 C 0.06 1.77 5.38 -17.82 -0.10 1.68 15 14 N -0.90 -25.68 11.55 55.43 0.64 -25.04 15 15 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 15 16 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 18 H -0.28 -6.68 7.11 56.52 0.40 -6.27 15 19 H 0.05 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.10 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.20 2.35 8.06 -52.49 -0.42 1.92 15 23 H 0.15 2.65 7.56 -52.49 -0.40 2.26 15 24 H 0.31 7.29 8.14 -39.29 -0.32 6.97 15 25 H 0.35 9.39 7.09 -39.29 -0.28 9.11 15 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 234.76 15.07 3.54 3.54 Total: -1.00 -30.92 234.76 -4.07 -34.99 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -2.65 Total: 11.43 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 0.11 Total: -10.24 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.58 Total: -46.29 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.63 Total: -10.15 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -30.92 -4.07 -34.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238441045.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.883 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds