Wall clock time and date at job start Mon Mar 30 2020 01:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35768 * 117.00166 * 2 1 4 4 O 1.34331 * 125.83814 * 359.97438 * 3 2 1 5 5 C 1.34580 * 109.47379 * 180.02562 * 4 3 2 6 6 C 1.34448 * 108.51668 * 359.72062 * 5 4 3 7 7 C 1.35131 * 125.84208 * 180.02562 * 3 2 1 8 8 C 1.50698 * 126.60517 * 359.97438 * 7 3 2 9 9 H 1.09001 * 109.46875 * 40.00070 * 8 7 3 10 10 N 1.46895 * 109.47244 * 160.00020 * 8 7 3 11 11 C 1.50697 * 109.46993 * 280.00391 * 8 7 3 12 12 H 1.07991 * 120.00449 * 359.72131 * 11 8 7 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 8 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 8 16 16 H 1.48498 * 109.47416 * 59.99812 * 15 13 11 17 17 H 1.48508 * 109.46609 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46903 * 299.99397 * 15 13 11 19 19 H 1.08999 * 109.47020 * 59.99705 * 1 2 3 20 20 H 1.09003 * 109.47040 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.46960 * 299.99519 * 1 2 3 22 22 H 1.07994 * 125.73944 * 180.02562 * 5 4 3 23 23 H 1.07995 * 126.55083 * 180.25947 * 6 5 4 24 24 H 1.00904 * 110.99999 * 59.99756 * 10 8 7 25 25 H 1.00895 * 111.00220 * 183.95559 * 10 8 7 26 26 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 8 1.4322 2.4049 -0.0005 5 6 2.3563 3.3832 -0.0009 6 6 3.5763 2.8183 0.0056 7 6 3.3807 1.4174 -0.0005 8 6 4.4545 0.3601 -0.0006 9 1 4.1609 -0.4559 -0.6609 10 7 5.7164 0.9438 -0.4748 11 6 4.6398 -0.1679 1.3987 12 1 4.0431 0.2262 2.2079 13 6 5.5748 -1.1505 1.6466 14 7 6.3011 -1.6308 0.6610 15 14 5.8098 -1.7994 3.3824 16 1 4.5351 -2.3863 3.8683 17 1 6.8671 -2.8423 3.3819 18 1 6.2145 -0.6852 4.2768 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.1522 4.4437 -0.0009 23 1 4.5245 3.3352 0.0109 24 1 6.0100 1.7032 0.1212 25 1 6.4362 0.2403 -0.5454 26 1 6.9586 -2.3223 0.8353 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238441045.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:42 Heat of formation + Delta-G solvation = -46.800073 kcal Electronic energy + Delta-G solvation = -12545.115440 eV Core-core repulsion = 10204.070452 eV Total energy + Delta-G solvation = -2341.044988 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.084 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.39573 -39.16182 -36.98187 -34.08414 -32.21256 -30.18363 -28.05665 -27.41932 -24.47493 -22.12000 -21.18485 -19.25446 -18.60100 -17.53596 -16.99608 -16.32811 -16.20333 -15.58407 -15.46512 -14.76430 -14.29182 -13.70441 -13.25137 -12.97723 -12.81568 -12.76435 -12.64014 -12.29276 -12.00419 -11.67272 -10.75215 -10.36575 -9.21251 -8.69926 -8.05733 -6.33352 1.01305 1.37269 1.38762 1.47241 1.71600 1.93496 2.40557 2.70612 3.07446 4.13255 4.28007 4.32084 4.38592 4.60235 4.60771 4.91661 5.12826 5.15440 5.59854 5.66046 5.78943 5.99417 6.13570 6.58014 6.68673 6.96576 7.16023 7.42138 8.86283 Molecular weight = 197.08amu Principal moments of inertia in cm(-1) A = 0.037502 B = 0.012323 C = 0.010718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.448830 B = 2271.669758 C = 2611.723515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.286 6.286 3 C 0.137 3.863 4 O -0.210 6.210 5 C -0.055 4.055 6 C -0.183 4.183 7 C -0.182 4.182 8 C 0.282 3.718 9 H -0.001 1.001 10 N -0.837 5.837 11 C -0.551 4.551 12 H 0.039 0.961 13 C 0.018 3.982 14 N -0.919 5.919 15 Si 0.960 3.040 16 H -0.277 1.277 17 H -0.278 1.278 18 H -0.270 1.270 19 H 0.066 0.934 20 H 0.124 0.876 21 H 0.062 0.938 22 H 0.254 0.746 23 H 0.159 0.841 24 H 0.319 0.681 25 H 0.344 0.656 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 7.112 0.178 11.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.202 6.202 3 C 0.045 3.955 4 O -0.111 6.111 5 C -0.119 4.119 6 C -0.203 4.203 7 C -0.185 4.185 8 C 0.171 3.829 9 H 0.017 0.983 10 N -0.365 5.365 11 C -0.591 4.591 12 H 0.058 0.942 13 C -0.181 4.181 14 N -0.559 5.559 15 Si 0.786 3.214 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.196 1.196 19 H 0.085 0.915 20 H 0.142 0.858 21 H 0.080 0.920 22 H 0.270 0.730 23 H 0.177 0.823 24 H 0.129 0.871 25 H 0.158 0.842 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.109 6.992 -0.552 11.497 hybrid contribution 0.536 -0.982 1.689 2.026 sum -8.573 6.010 1.138 10.531 Atomic orbital electron populations 1.23277 0.76153 1.05807 1.02431 1.86560 1.24044 1.19095 1.90471 1.20091 0.89033 0.78659 1.07748 1.83868 1.38422 1.14128 1.74697 1.24448 0.85063 0.93331 1.09085 1.21610 0.99958 0.91953 1.06745 1.20099 0.91311 0.96778 1.10312 1.16949 0.85777 0.88108 0.92020 0.98349 1.59373 1.07480 1.14683 1.54994 1.21984 1.20343 1.21462 0.95274 0.94242 1.25780 0.95377 0.95841 1.01149 1.69850 1.24148 1.29160 1.32733 0.85585 0.77694 0.78131 0.80027 1.20247 1.20283 1.19560 0.91536 0.85757 0.91969 0.72997 0.82301 0.87138 0.84197 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.76 113.37 1.22 1.71 15 2 O -0.29 -12.22 10.52 -68.83 -0.72 -12.95 15 3 C 0.14 6.03 7.82 67.10 0.53 6.56 15 4 O -0.21 -7.57 10.16 16.65 0.17 -7.40 15 5 C -0.05 -1.68 12.09 66.95 0.81 -0.87 15 6 C -0.18 -7.02 10.12 22.19 0.22 -6.80 15 7 C -0.18 -8.74 5.25 -19.79 -0.10 -8.84 15 8 C 0.28 15.64 3.15 43.42 0.14 15.78 15 9 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 15 10 N -0.84 -42.81 8.92 -174.97 -1.56 -44.37 15 11 C -0.55 -32.12 8.71 25.60 0.22 -31.89 15 12 H 0.04 2.34 7.74 -2.92 -0.02 2.32 15 13 C 0.02 1.02 5.38 84.66 0.46 1.48 15 14 N -0.92 -53.40 11.55 21.45 0.25 -53.15 15 15 Si 0.96 44.72 29.54 68.60 2.03 46.74 15 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 15 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 15 18 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 19 H 0.07 1.64 8.14 -2.39 -0.02 1.62 15 20 H 0.12 2.77 8.14 -2.39 -0.02 2.75 15 21 H 0.06 1.60 8.14 -2.39 -0.02 1.58 15 22 H 0.25 4.54 8.06 -2.91 -0.02 4.52 15 23 H 0.16 5.50 7.56 -2.91 -0.02 5.48 15 24 H 0.32 15.17 8.14 -89.69 -0.73 14.44 15 25 H 0.34 18.73 7.09 -89.70 -0.64 18.09 15 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 15 Total: -1.00 -68.20 234.76 3.49 -64.72 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: -0.16 Total: 29.29 kcal Atomic # 6 Polarization: -26.37 SS G_CDS: 3.49 Total: -22.88 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -1.31 Total: -97.52 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.55 Total: -20.35 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -68.20 3.49 -64.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238441045.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.918 kcal (2) G-P(sol) polarization free energy of solvation -68.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds