Wall clock time and date at job start Mon Mar 30 2020 01:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48502 * 109.47432 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46890 * 299.99896 * 3 2 1 6 6 H 1.48501 * 109.47062 * 59.99944 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.47149 * 121.03369 * 89.99888 * 10 9 7 12 12 C 1.51106 * 107.90784 * 221.08154 * 11 10 9 13 13 C 1.33921 * 119.31737 * 333.45714 * 12 11 10 14 14 N 1.39391 * 119.46675 * 180.15671 * 13 12 11 15 15 N 1.36123 * 121.07630 * 0.18240 * 13 12 11 16 16 C 1.31405 * 121.31064 * 15.47354 * 15 13 12 17 17 O 1.34971 * 120.44254 * 179.73400 * 16 15 13 18 18 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 19 19 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 20 20 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 21 21 H 1.08997 * 109.77469 * 340.68652 * 11 10 9 22 22 H 1.09003 * 109.77090 * 101.47677 * 11 10 9 23 23 H 1.07998 * 120.34304 * 153.48115 * 12 11 10 24 24 H 0.96998 * 119.99228 * 0.02562 * 14 13 12 25 25 H 0.96997 * 120.00430 * 180.02562 * 14 13 12 26 26 H 0.96701 * 113.99787 * 0.22847 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6959 -4.1893 1.2614 12 6 4.1732 -4.4633 1.1008 13 6 4.6685 -4.6921 -0.1223 14 7 6.0302 -4.9484 -0.2737 15 7 3.8638 -4.6780 -1.2202 16 6 2.6590 -4.1552 -1.1771 17 8 1.8780 -4.1457 -2.2778 18 1 -0.4850 0.8401 0.0004 19 1 0.6239 -2.5567 0.8903 20 1 0.6246 -2.5571 -0.8897 21 1 2.5383 -3.4829 2.0764 22 1 2.1690 -5.1199 1.4721 23 1 4.8229 -4.4748 1.9634 24 1 6.6107 -4.9604 0.5033 25 1 6.3973 -5.1148 -1.1560 26 1 2.2881 -4.5502 -3.0546 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238612839.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:32 Heat of formation + Delta-G solvation = 8.195571 kcal Electronic energy + Delta-G solvation = -12441.025049 eV Core-core repulsion = 10134.657602 eV Total energy + Delta-G solvation = -2306.367447 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.46894 -36.87470 -34.92908 -32.86325 -31.51946 -29.64488 -26.95908 -23.98412 -23.17038 -21.47505 -18.96948 -17.08921 -16.47081 -15.85417 -15.57147 -14.95309 -14.54949 -14.16920 -13.58722 -12.83818 -12.42864 -12.30544 -11.82481 -11.56079 -11.26395 -10.89173 -10.67800 -10.15375 -9.83105 -9.14828 -8.97899 -8.51224 -7.67734 -6.50840 -6.10216 -4.18787 2.30302 3.20411 3.25627 3.33286 3.40476 4.00395 4.29076 4.40284 4.91026 5.21012 5.68820 6.03211 6.20520 6.41448 6.52442 6.85260 7.06280 7.27478 7.43729 7.71442 7.80735 7.96315 8.12355 8.23943 8.41259 8.89401 9.10759 9.47549 10.94635 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.039395 B = 0.011136 C = 0.010231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.571824 B = 2513.816360 C = 2736.145623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.248 3.752 10 N -0.595 5.595 11 C 0.208 3.792 12 C -0.420 4.420 13 C 0.411 3.589 14 N -0.872 5.872 15 N -0.677 5.677 16 C 0.624 3.376 17 O -0.455 6.455 18 H 0.264 0.736 19 H 0.036 0.964 20 H 0.043 0.957 21 H 0.083 0.917 22 H 0.036 0.964 23 H 0.107 0.893 24 H 0.398 0.602 25 H 0.390 0.610 26 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.029 -7.562 -0.884 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.572 4.572 8 H 0.079 0.921 9 C 0.128 3.872 10 N -0.318 5.318 11 C 0.085 3.915 12 C -0.452 4.452 13 C 0.202 3.798 14 N -0.415 5.415 15 N -0.431 5.431 16 C 0.319 3.681 17 O -0.248 6.248 18 H 0.074 0.926 19 H 0.054 0.946 20 H 0.061 0.939 21 H 0.101 0.899 22 H 0.054 0.946 23 H 0.125 0.875 24 H 0.227 0.773 25 H 0.217 0.783 26 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 5.590 -7.402 -1.127 9.344 hybrid contribution 0.928 1.078 0.229 1.441 sum 6.519 -6.324 -0.898 9.126 Atomic orbital electron populations 1.69942 1.05986 1.27114 1.50186 1.24945 0.94890 0.99286 0.94862 0.86417 0.80102 0.83117 0.77695 1.19743 1.20826 1.20776 1.21569 0.93681 0.90500 1.51470 0.92137 1.19447 0.87135 0.81782 0.98866 1.47771 1.47518 1.34565 1.01938 1.19995 0.90834 0.96075 0.84582 1.22558 0.97796 1.28686 0.96202 1.16690 0.83837 0.90589 0.88677 1.42049 1.05273 1.83205 1.10961 1.68125 1.03885 1.40349 1.30701 1.19819 0.84254 0.82293 0.81782 1.84803 1.41503 1.78048 1.20422 0.92626 0.94560 0.93871 0.89905 0.94616 0.87491 0.77310 0.78297 0.73065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.89 13.29 55.43 0.74 -25.16 15 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 15 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 15 5 H -0.28 -6.71 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.25 15 7 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 15 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 15 9 C 0.25 6.39 5.46 -5.19 -0.03 6.36 15 10 N -0.59 -13.47 2.84 -177.91 -0.50 -13.97 15 11 C 0.21 4.19 6.86 -4.64 -0.03 4.15 15 12 C -0.42 -8.17 10.10 -35.63 -0.36 -8.53 15 13 C 0.41 7.97 7.62 -153.21 -1.17 6.80 15 14 N -0.87 -13.10 9.08 30.89 0.28 -12.82 15 15 N -0.68 -13.62 10.45 -13.50 -0.14 -13.76 15 16 C 0.62 13.12 8.34 -87.38 -0.73 12.39 15 17 O -0.46 -8.29 12.77 -16.63 -0.21 -8.50 15 18 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 19 H 0.04 0.96 8.10 -51.93 -0.42 0.54 15 20 H 0.04 1.18 7.44 -51.93 -0.39 0.79 15 21 H 0.08 1.66 8.04 -51.93 -0.42 1.24 15 22 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 23 H 0.11 1.87 8.05 -52.49 -0.42 1.45 15 24 H 0.40 4.95 8.79 -40.82 -0.36 4.59 15 25 H 0.39 5.28 8.96 -40.82 -0.37 4.91 15 26 H 0.41 5.16 8.98 45.56 0.41 5.57 15 LS Contribution 235.15 15.07 3.54 3.54 Total: -1.00 -31.77 235.15 -5.99 -37.75 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -1.93 Total: 8.80 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.74 Total: 7.46 kcal Atomic # 7 Polarization: -66.08 SS G_CDS: 0.37 Total: -65.71 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.21 Total: -8.50 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.77 -5.99 -37.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238612839.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.949 kcal (2) G-P(sol) polarization free energy of solvation -31.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds