Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47143 * 299.99786 * 3 2 1 6 6 H 1.48503 * 109.47002 * 59.99778 * 3 2 1 7 7 C 1.37879 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00345 * 0.02562 * 7 2 1 10 10 C 1.50691 * 109.47341 * 179.97438 * 9 7 2 11 11 O 1.21278 * 120.00190 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00270 * 180.02562 * 10 9 7 13 13 C 1.46504 * 120.00207 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46983 * 179.97438 * 13 12 10 15 15 C 1.53786 * 113.61503 * 85.86203 * 14 13 12 16 16 C 1.54049 * 86.98426 * 140.01654 * 15 14 13 17 17 C 1.53781 * 113.61337 * 183.46996 * 14 13 12 18 18 H 0.96997 * 119.99813 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46992 * 59.99741 * 9 7 2 20 20 H 1.08994 * 109.46980 * 300.00309 * 9 7 2 21 21 H 0.96999 * 120.00146 * 359.97438 * 12 10 9 22 22 H 1.09000 * 109.47232 * 59.99775 * 13 12 10 23 23 H 1.08997 * 109.47041 * 299.99591 * 13 12 10 24 24 H 1.09002 * 112.85017 * 314.66585 * 14 13 12 25 25 H 1.08992 * 113.61675 * 254.61398 * 15 14 13 26 26 H 1.09000 * 113.60973 * 25.51686 * 15 14 13 27 27 H 1.09005 * 113.62125 * 220.02158 * 16 15 14 28 28 H 1.09003 * 113.61268 * 89.11946 * 16 15 14 29 29 H 1.08999 * 113.61567 * 334.48261 * 17 14 13 30 30 H 1.09000 * 113.61379 * 105.30384 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7812 -4.9152 0.0000 13 6 2.7332 -6.0288 0.0006 14 6 1.9682 -7.3538 0.0005 15 6 1.5727 -7.8367 -1.4050 16 6 1.9366 -9.2565 -0.9310 17 6 2.8781 -8.5905 0.0863 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8902 21 1 0.8275 -5.0926 0.0000 22 1 3.3592 -5.9712 0.8910 23 1 3.3605 -5.9709 -0.8889 24 1 1.1447 -7.3672 0.7145 25 1 0.5139 -7.7077 -1.6292 26 1 2.2226 -7.4602 -2.1949 27 1 2.4563 -9.8487 -1.6843 28 1 1.1046 -9.7902 -0.4716 29 1 3.8843 -8.4198 -0.2967 30 1 2.8736 -9.0688 1.0657 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258782508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = -37.537623 kcal Electronic energy + Delta-G solvation = -12108.089828 eV Core-core repulsion = 9903.279585 eV Total energy + Delta-G solvation = -2204.810244 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.28707 -38.05472 -33.68749 -32.88075 -29.39498 -27.50247 -25.68440 -23.73447 -22.22289 -19.94509 -19.08548 -16.38884 -16.16333 -15.64602 -14.93141 -14.56307 -14.40325 -14.01998 -13.09997 -12.66510 -12.52901 -12.05554 -11.92730 -11.69156 -11.09699 -10.75872 -10.64420 -10.59719 -10.42947 -10.26478 -9.91363 -9.21527 -8.57781 -8.43819 -8.33644 -6.02775 -4.01842 3.35618 3.42408 3.51370 3.79238 3.95134 4.50910 4.54764 4.62050 4.68745 4.82188 5.33391 5.35544 5.47096 5.61609 5.67015 5.77271 5.82155 5.95352 6.01500 6.20632 6.38005 6.48632 7.13098 7.24743 7.37526 7.99583 8.11858 8.50860 9.09733 9.30639 9.63305 11.09814 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.094129 B = 0.006208 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.394291 B = 4509.400026 C = 4688.070291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.075 0.925 9 C 0.004 3.996 10 C 0.512 3.488 11 O -0.549 6.549 12 N -0.748 5.748 13 C 0.130 3.870 14 C -0.123 4.123 15 C -0.137 4.137 16 C -0.143 4.143 17 C -0.132 4.132 18 H 0.260 0.740 19 H 0.047 0.953 20 H 0.047 0.953 21 H 0.395 0.605 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.646 -15.860 -0.820 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.093 0.907 9 C -0.035 4.035 10 C 0.302 3.698 11 O -0.425 6.425 12 N -0.403 5.403 13 C 0.005 3.995 14 C -0.142 4.142 15 C -0.174 4.174 16 C -0.180 4.180 17 C -0.170 4.170 18 H 0.070 0.930 19 H 0.065 0.935 20 H 0.065 0.935 21 H 0.228 0.772 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.395 -15.561 -0.820 15.645 hybrid contribution -0.167 0.764 0.020 0.782 sum 1.228 -14.797 -0.800 14.869 Atomic orbital electron populations 1.69974 1.06045 1.26739 1.51436 1.25016 0.94911 0.99492 0.95291 0.86379 0.80341 0.83003 0.77435 1.19484 1.21024 1.21028 1.21227 0.94312 0.89173 1.49735 0.90659 1.19239 0.94203 0.90700 0.99404 1.21994 0.91050 0.83527 0.73198 1.90527 1.18101 1.84751 1.49129 1.46305 1.09513 1.05981 1.78456 1.21190 0.92132 0.84647 1.01487 1.22808 0.99243 0.93874 0.98265 1.23036 1.01725 0.95921 0.96712 1.22859 0.99577 0.96579 0.99015 1.22870 0.98433 0.96097 0.99633 0.93010 0.93519 0.93518 0.77172 0.92318 0.92235 0.88788 0.91402 0.89912 0.91590 0.90331 0.89884 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 2 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.51 -15.02 8.92 -34.44 -0.31 -15.32 16 8 H 0.08 2.34 6.75 -52.48 -0.35 1.98 16 9 C 0.00 0.10 5.46 -29.04 -0.16 -0.06 16 10 C 0.51 12.05 7.82 -10.99 -0.09 11.96 16 11 O -0.55 -14.83 15.46 5.56 0.09 -14.74 16 12 N -0.75 -13.25 5.56 -60.29 -0.33 -13.58 16 13 C 0.13 1.96 5.50 -4.04 -0.02 1.94 16 14 C -0.12 -1.37 3.75 -89.80 -0.34 -1.71 16 15 C -0.14 -1.39 7.65 -25.77 -0.20 -1.59 16 16 C -0.14 -1.24 8.09 -25.78 -0.21 -1.45 16 17 C -0.13 -1.26 7.64 -25.92 -0.20 -1.45 16 18 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 19 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 20 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 21 H 0.40 5.94 8.47 -40.82 -0.35 5.59 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.06 0.95 7.88 -51.93 -0.41 0.54 16 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.90 7.92 -51.93 -0.41 0.48 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 258.02 15.07 3.89 3.89 Total: -1.00 -32.71 258.02 -6.71 -39.42 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.46 Total: -0.09 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.61 Total: -6.22 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.40 Total: -39.68 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.09 Total: -14.74 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -32.71 -6.71 -39.42 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258782508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.887 kcal (2) G-P(sol) polarization free energy of solvation -32.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds