Wall clock time and date at job start Mon Mar 30 2020 02:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 119.99887 * 2 1 4 4 H 1.48501 * 109.47189 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47143 * 299.99786 * 3 2 1 6 6 H 1.48503 * 109.47002 * 59.99778 * 3 2 1 7 7 C 1.37879 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99684 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00345 * 0.02562 * 7 2 1 10 10 C 1.50691 * 109.47341 * 179.97438 * 9 7 2 11 11 O 1.21278 * 120.00190 * 0.02562 * 10 9 7 12 12 N 1.34775 * 120.00270 * 180.02562 * 10 9 7 13 13 C 1.46504 * 120.00207 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46983 * 179.97438 * 13 12 10 15 15 C 1.53786 * 113.61503 * 85.86203 * 14 13 12 16 16 C 1.54049 * 86.98426 * 140.01654 * 15 14 13 17 17 C 1.53781 * 113.61337 * 183.46996 * 14 13 12 18 18 H 0.96997 * 119.99813 * 0.02562 * 1 2 3 19 19 H 1.09000 * 109.46992 * 59.99741 * 9 7 2 20 20 H 1.08994 * 109.46980 * 300.00309 * 9 7 2 21 21 H 0.96999 * 120.00146 * 359.97438 * 12 10 9 22 22 H 1.09000 * 109.47232 * 59.99775 * 13 12 10 23 23 H 1.08997 * 109.47041 * 299.99591 * 13 12 10 24 24 H 1.09002 * 112.85017 * 314.66585 * 14 13 12 25 25 H 1.08992 * 113.61675 * 254.61398 * 15 14 13 26 26 H 1.09000 * 113.60973 * 25.51686 * 15 14 13 27 27 H 1.09005 * 113.62125 * 220.02158 * 16 15 14 28 28 H 1.09003 * 113.61268 * 89.11946 * 16 15 14 29 29 H 1.08999 * 113.61567 * 334.48261 * 17 14 13 30 30 H 1.09000 * 113.61379 * 105.30384 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 8 3.4227 -3.4230 0.0010 12 7 1.7812 -4.9152 0.0000 13 6 2.7332 -6.0288 0.0006 14 6 1.9682 -7.3538 0.0005 15 6 1.5727 -7.8367 -1.4050 16 6 1.9366 -9.2565 -0.9310 17 6 2.8781 -8.5905 0.0863 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5571 -0.8897 20 1 0.6241 -2.5567 0.8902 21 1 0.8275 -5.0926 0.0000 22 1 3.3592 -5.9712 0.8910 23 1 3.3605 -5.9709 -0.8889 24 1 1.1447 -7.3672 0.7145 25 1 0.5139 -7.7077 -1.6292 26 1 2.2226 -7.4602 -2.1949 27 1 2.4563 -9.8487 -1.6843 28 1 1.1046 -9.7902 -0.4716 29 1 3.8843 -8.4198 -0.2967 30 1 2.8736 -9.0688 1.0657 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258782508.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:26 Heat of formation + Delta-G solvation = -59.680821 kcal Electronic energy + Delta-G solvation = -12109.050029 eV Core-core repulsion = 9903.279585 eV Total energy + Delta-G solvation = -2205.770445 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.64530 -39.42342 -35.30072 -35.07891 -31.33656 -28.95961 -26.47085 -25.63697 -23.45258 -21.49754 -20.15766 -18.54301 -17.77327 -16.96798 -16.54590 -16.30747 -15.89706 -15.19706 -14.53946 -14.47808 -14.15129 -13.30982 -13.23574 -12.85437 -12.80157 -12.64549 -12.47452 -12.06078 -11.49751 -11.43450 -11.28653 -11.12867 -10.63427 -10.47763 -9.95454 -8.25900 -6.33231 1.39645 1.40074 1.55449 1.89019 2.34927 2.53943 3.09295 3.69668 3.74164 3.84531 4.01058 4.33721 4.40977 4.57589 4.76973 4.89376 4.89876 5.00942 5.08190 5.12924 5.14363 5.25980 5.34105 5.56697 5.65784 5.75098 6.05857 6.72126 6.84883 7.33360 7.52490 8.86583 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.094129 B = 0.006208 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 297.394291 B = 4509.400026 C = 4688.070291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.538 4.538 8 H 0.053 0.947 9 C 0.007 3.993 10 C 0.515 3.485 11 O -0.590 6.590 12 N -0.725 5.725 13 C 0.129 3.871 14 C -0.121 4.121 15 C -0.141 4.141 16 C -0.132 4.132 17 C -0.130 4.130 18 H 0.268 0.732 19 H 0.042 0.958 20 H 0.043 0.957 21 H 0.411 0.589 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.106 0.894 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.259 -16.735 -0.776 16.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.576 4.576 8 H 0.072 0.928 9 C -0.033 4.033 10 C 0.304 3.696 11 O -0.470 6.470 12 N -0.378 5.378 13 C 0.005 3.995 14 C -0.139 4.139 15 C -0.178 4.178 16 C -0.169 4.169 17 C -0.168 4.168 18 H 0.076 0.924 19 H 0.060 0.940 20 H 0.061 0.939 21 H 0.247 0.753 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.124 0.876 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.963 -16.486 -0.777 16.533 hybrid contribution -0.080 0.983 0.005 0.986 sum 0.883 -15.504 -0.773 15.548 Atomic orbital electron populations 1.70039 1.07137 1.28064 1.51250 1.25806 0.95876 1.02792 0.94432 0.85384 0.78537 0.78745 0.78294 1.20052 1.19639 1.19642 1.21412 0.93657 0.91377 1.51150 0.92829 1.19085 0.94305 0.91003 0.98857 1.21500 0.89806 0.84903 0.73406 1.90503 1.19353 1.85653 1.51480 1.46032 1.10964 1.04845 1.75943 1.21385 0.92013 0.85478 1.00600 1.22849 0.99695 0.91899 0.99493 1.23063 1.01914 0.97130 0.95714 1.22829 0.99671 0.95695 0.98720 1.22890 0.98198 0.95030 1.00695 0.92354 0.93964 0.93930 0.75332 0.93201 0.93196 0.87584 0.90810 0.90877 0.90695 0.88945 0.90167 0.90227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.78 13.29 21.45 0.28 -54.50 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.97 45.97 29.54 68.60 2.03 48.00 16 4 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.54 -32.51 8.92 25.60 0.23 -32.28 16 8 H 0.05 3.42 6.75 -2.91 -0.02 3.40 16 9 C 0.01 0.37 5.46 29.10 0.16 0.53 16 10 C 0.51 24.53 7.82 87.65 0.69 25.22 16 11 O -0.59 -32.62 15.46 -3.02 -0.05 -32.67 16 12 N -0.72 -25.27 5.56 -463.06 -2.57 -27.85 16 13 C 0.13 3.79 5.50 86.38 0.47 4.27 16 14 C -0.12 -2.44 3.75 -10.26 -0.04 -2.48 16 15 C -0.14 -2.58 7.65 31.21 0.24 -2.34 16 16 C -0.13 -1.90 8.09 31.21 0.25 -1.65 16 17 C -0.13 -2.16 7.64 31.12 0.24 -1.92 16 18 H 0.27 14.77 8.31 -92.71 -0.77 13.99 16 19 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 20 H 0.04 2.26 8.14 -2.39 -0.02 2.24 16 21 H 0.41 11.83 8.47 -92.71 -0.79 11.04 16 22 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.05 1.59 7.88 -2.39 -0.02 1.57 16 24 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.49 7.92 -2.39 -0.02 1.47 16 27 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.38 8.10 -2.39 -0.02 1.37 16 30 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -69.88 258.02 2.73 -67.15 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: 0.33 Total: 9.51 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 2.70 Total: -9.64 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.29 Total: -82.35 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.05 Total: -32.67 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -69.88 2.73 -67.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258782508.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.473 kcal (2) G-P(sol) polarization free energy of solvation -69.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds