Wall clock time and date at job start Mon Mar 30 2020 02:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99617 * 2 1 4 4 H 1.48505 * 109.47348 * 270.00449 * 3 2 1 5 5 H 1.48502 * 109.47358 * 30.00329 * 3 2 1 6 6 H 1.48497 * 109.47167 * 150.00392 * 3 2 1 7 7 C 1.37874 * 120.00356 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00042 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.90685 * 301.00328 * 9 7 2 11 11 C 1.53784 * 109.86146 * 61.99900 * 9 7 2 12 12 O 1.42655 * 110.93904 * 173.50348 * 11 9 7 13 13 C 1.43671 * 115.71152 * 306.32995 * 12 11 9 14 14 C 1.52265 * 107.20511 * 56.99151 * 13 12 11 15 15 H 1.08993 * 111.49870 * 60.36746 * 14 13 12 16 16 C 1.53801 * 113.88357 * 186.94760 * 14 13 12 17 17 C 1.55432 * 101.99211 * 155.09637 * 16 14 13 18 18 C 1.54915 * 104.96051 * 337.67020 * 17 16 14 19 19 N 1.45477 * 109.86405 * 180.02562 * 9 7 2 20 20 H 0.96998 * 120.00870 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.18359 * 293.87857 * 11 9 7 22 22 H 1.09001 * 109.18307 * 53.13342 * 11 9 7 23 23 H 1.09004 * 109.91226 * 176.38004 * 13 12 11 24 24 H 1.09004 * 109.91066 * 297.45472 * 13 12 11 25 25 H 1.09002 * 110.93497 * 36.91006 * 16 14 13 26 26 H 1.09003 * 110.92851 * 273.27715 * 16 14 13 27 27 H 1.08999 * 110.34065 * 96.53739 * 17 16 14 28 28 H 1.08997 * 110.34203 * 218.79727 * 17 16 14 29 29 H 1.09002 * 110.18204 * 115.02778 * 18 17 16 30 30 H 1.08999 * 110.18152 * 236.86075 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6087 -2.5569 0.8782 11 6 0.4013 -2.6119 -1.2773 12 8 -0.2046 -3.8997 -1.3744 13 6 0.6911 -5.0189 -1.2773 14 6 1.4289 -4.8916 0.0486 15 1 0.7394 -4.9070 0.8925 16 6 2.5540 -5.9232 0.2366 17 6 3.4905 -5.1996 1.2443 18 6 3.1591 -3.6944 1.0883 19 7 2.1889 -3.6113 -0.0005 20 1 -0.4851 0.8400 0.0004 21 1 -0.3779 -1.8500 -1.2573 22 1 1.0381 -2.4492 -2.1469 23 1 0.1251 -5.9502 -1.2986 24 1 1.4022 -4.9980 -2.1032 25 1 3.0686 -6.1143 -0.7051 26 1 2.1663 -6.8492 0.6612 27 1 3.2804 -5.5304 2.2614 28 1 4.5344 -5.3859 0.9923 29 1 2.7239 -3.3076 2.0098 30 1 4.0596 -3.1356 0.8334 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259601330.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:55 Heat of formation + Delta-G solvation = -60.465118 kcal Electronic energy + Delta-G solvation = -13259.902620 eV Core-core repulsion = 11054.098165 eV Total energy + Delta-G solvation = -2205.804454 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.90293 -37.57152 -35.57730 -32.92656 -31.07294 -29.14251 -27.32345 -24.96111 -23.33059 -21.62410 -20.93073 -18.37595 -17.39618 -16.83934 -16.63661 -16.12553 -16.01559 -15.08964 -14.65138 -14.39193 -14.04884 -13.42124 -13.06224 -12.86737 -12.69379 -12.35725 -12.12720 -12.02921 -11.84101 -11.52989 -11.43604 -10.93676 -10.77582 -10.34362 -9.05842 -8.23980 -6.37004 1.39030 1.39960 1.50873 2.35736 2.97676 3.08709 3.35523 3.75557 3.93660 4.12169 4.27994 4.37346 4.51285 4.65480 4.71791 4.81490 4.85039 4.94889 4.99358 5.10154 5.17715 5.27219 5.36280 5.51442 5.60542 5.90825 6.34333 6.40398 6.61526 6.82765 7.34195 8.84403 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.043562 B = 0.013051 C = 0.010560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.603781 B = 2144.991568 C = 2650.777276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.013 3.987 3 Si 0.969 3.031 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.202 3.798 10 H -0.040 1.040 11 C 0.091 3.909 12 O -0.425 6.425 13 C 0.076 3.924 14 C 0.018 3.982 15 H 0.033 0.967 16 C -0.097 4.097 17 C -0.118 4.118 18 C 0.058 3.942 19 N -0.544 5.544 20 H 0.267 0.733 21 H 0.088 0.912 22 H 0.025 0.975 23 H 0.119 0.881 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.009 0.991 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -9.628 0.229 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.094 3.906 10 H -0.023 1.023 11 C 0.014 3.986 12 O -0.344 6.344 13 C 0.000 4.000 14 C -0.091 4.091 15 H 0.051 0.949 16 C -0.135 4.135 17 C -0.155 4.155 18 C -0.070 4.070 19 N -0.270 5.270 20 H 0.076 0.924 21 H 0.105 0.895 22 H 0.043 0.957 23 H 0.136 0.864 24 H 0.077 0.923 25 H 0.103 0.897 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.027 0.973 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.012 -9.422 -0.227 10.674 hybrid contribution -0.143 1.393 0.935 1.684 sum 4.868 -8.028 0.708 9.416 Atomic orbital electron populations 1.70002 1.07387 1.28019 1.50614 1.25850 0.95801 1.02933 0.94085 0.85385 0.78435 0.78273 0.78544 1.19632 1.20581 1.19261 1.21255 0.93245 0.90555 1.51603 0.92239 1.19456 0.89399 0.89582 0.92207 1.02265 1.22658 0.96883 0.82443 0.96663 1.87706 1.37199 1.15469 1.94052 1.22702 0.92701 0.89352 0.95264 1.23364 0.96072 0.92116 0.97516 0.94940 1.22287 0.94323 0.96564 1.00350 1.22678 1.01016 0.91981 0.99872 1.22320 0.95502 0.97909 0.91240 1.62775 1.16485 1.02423 1.45340 0.92373 0.89452 0.95652 0.86350 0.92319 0.89733 0.88521 0.90507 0.89195 0.97265 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.20 11.56 21.45 0.25 -53.96 16 2 C 0.01 0.72 5.32 84.65 0.45 1.17 16 3 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.53 -30.16 8.28 25.60 0.21 -29.94 16 8 H 0.06 3.37 7.38 -2.91 -0.02 3.34 16 9 C 0.20 10.98 2.11 44.70 0.09 11.08 16 10 H -0.04 -2.49 8.10 -2.39 -0.02 -2.50 16 11 C 0.09 4.80 6.07 72.25 0.44 5.24 16 12 O -0.42 -20.01 10.73 -148.98 -1.60 -21.61 16 13 C 0.08 2.76 6.67 71.74 0.48 3.24 16 14 C 0.02 0.66 2.79 44.54 0.12 0.78 16 15 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 16 C -0.10 -2.57 6.63 31.70 0.21 -2.36 16 17 C -0.12 -3.24 6.99 32.09 0.22 -3.01 16 18 C 0.06 2.30 6.09 87.12 0.53 2.83 16 19 N -0.54 -24.53 4.42 -845.03 -3.74 -28.27 16 20 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 21 H 0.09 5.09 6.43 -2.39 -0.02 5.07 16 22 H 0.03 1.34 8.14 -2.39 -0.02 1.33 16 23 H 0.12 3.34 8.14 -2.39 -0.02 3.32 16 24 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 25 H 0.08 2.07 8.12 -2.39 -0.02 2.05 16 26 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.01 0.39 8.07 -2.39 -0.02 0.37 16 30 H 0.06 2.52 7.96 -2.39 -0.02 2.50 16 Total: -1.00 -64.94 239.83 0.80 -64.14 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.10 Total: 4.61 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 2.76 Total: -10.98 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -3.49 Total: -82.23 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.60 Total: -21.61 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -64.94 0.80 -64.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601330.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.671 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds