Wall clock time and date at job start Mon Mar 30 2020 02:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99839 * 2 1 4 4 H 1.48506 * 109.47334 * 239.99779 * 3 2 1 5 5 H 1.48502 * 109.47418 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47108 * 120.00105 * 3 2 1 7 7 C 1.37880 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99892 * 359.97438 * 7 2 1 10 10 H 1.09002 * 108.31940 * 57.61881 * 9 7 2 11 11 C 1.52566 * 108.51104 * 175.23549 * 9 7 2 12 12 C 1.50882 * 109.36098 * 206.26708 * 11 9 7 13 13 C 1.53948 * 110.09473 * 268.11499 * 12 11 9 14 14 N 1.47610 * 112.14412 * 40.55840 * 13 12 11 15 15 C 1.34765 * 118.64764 * 222.10984 * 14 13 12 16 16 O 1.21278 * 120.00511 * 180.02562 * 15 14 13 17 17 C 1.44582 * 122.70695 * 42.13460 * 14 13 12 18 18 C 1.47096 * 108.51484 * 299.99874 * 9 7 2 19 19 H 0.96995 * 119.99880 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.48973 * 326.22822 * 11 9 7 21 21 H 1.08994 * 109.49354 * 86.29951 * 11 9 7 22 22 H 1.08996 * 109.37291 * 147.92508 * 12 11 9 23 23 H 1.09003 * 109.36644 * 28.30018 * 12 11 9 24 24 H 1.09004 * 108.94986 * 279.87828 * 13 12 11 25 25 H 1.08995 * 108.95128 * 161.24470 * 13 12 11 26 26 H 1.08005 * 120.00147 * 0.02562 * 15 14 13 27 27 H 1.08999 * 109.44790 * 149.23575 * 17 14 13 28 28 H 1.09001 * 109.43004 * 29.29976 * 17 14 13 29 29 H 1.08994 * 109.32703 * 296.21004 * 18 9 7 30 30 H 1.09006 * 109.32477 * 55.68507 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5995 -2.5186 -0.8742 11 6 2.2574 -3.6395 -0.1213 12 6 1.5868 -4.8334 -0.7549 13 6 1.0077 -5.7545 0.3343 14 7 0.3793 -4.9923 1.4311 15 6 0.5933 -5.3913 2.7004 16 8 0.0886 -4.7834 3.6205 17 6 -0.4569 -3.8357 1.1998 18 6 0.4140 -2.5552 1.2077 19 1 -0.4850 0.8400 0.0004 20 1 3.0950 -3.3211 -0.7420 21 1 2.6211 -3.9102 0.8698 22 1 2.3167 -5.3868 -1.3456 23 1 0.7815 -4.4925 -1.4056 24 1 1.8110 -6.3668 0.7439 25 1 0.2606 -6.4083 -0.1156 26 1 1.2143 -6.2525 2.8984 27 1 -1.2086 -3.7682 1.9862 28 1 -0.9507 -3.9328 0.2329 29 1 1.0540 -2.5596 2.0900 30 1 -0.2333 -1.6788 1.2391 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259681593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:12 Heat of formation + Delta-G solvation = -44.125062 kcal Electronic energy + Delta-G solvation = -13087.339391 eV Core-core repulsion = 10882.243495 eV Total energy + Delta-G solvation = -2205.095896 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.43401 -36.85226 -34.04720 -32.15068 -30.99350 -27.04447 -25.16183 -23.57555 -21.80729 -19.35358 -19.00295 -17.05240 -15.96562 -15.65991 -14.70770 -14.60356 -13.61796 -13.40388 -13.23763 -12.61870 -12.29838 -11.84230 -11.48139 -11.15817 -10.91670 -10.66186 -10.46927 -10.36784 -9.99327 -9.49777 -9.37495 -9.08142 -8.81153 -8.29989 -7.91722 -5.95464 -4.02920 3.15765 3.33315 3.38141 3.40648 3.64408 4.45683 5.05917 5.15207 5.33609 5.43259 5.61965 5.95667 6.00592 6.13160 6.36623 6.46650 6.56332 6.71471 6.80473 6.98702 7.11045 7.32211 7.63946 7.77955 7.89928 8.05900 8.24493 8.51582 8.61952 9.02332 9.61945 11.08655 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047033 B = 0.011130 C = 0.010024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.178947 B = 2515.116481 C = 2792.608269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.052 0.948 9 C 0.041 3.959 10 H 0.023 0.977 11 C -0.104 4.104 12 C -0.132 4.132 13 C 0.116 3.884 14 N -0.602 5.602 15 C 0.482 3.518 16 O -0.561 6.561 17 C 0.107 3.893 18 C -0.114 4.114 19 H 0.261 0.739 20 H 0.052 0.948 21 H 0.044 0.956 22 H 0.062 0.938 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.583 -10.389 -1.046 10.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.551 4.551 8 H 0.070 0.930 9 C 0.023 3.977 10 H 0.041 0.959 11 C -0.142 4.142 12 C -0.170 4.170 13 C -0.007 4.007 14 N -0.337 5.337 15 C 0.251 3.749 16 O -0.438 6.438 17 C -0.016 4.016 18 C -0.153 4.153 19 H 0.071 0.929 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.080 0.920 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.074 0.926 26 H 0.129 0.871 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.149 -9.929 -0.584 10.012 hybrid contribution 0.588 0.893 -0.147 1.079 sum 1.737 -9.036 -0.731 9.230 Atomic orbital electron populations 1.69794 1.05824 1.26473 1.51106 1.24970 0.94884 0.99056 0.95302 0.86686 0.79631 0.83333 0.78510 1.20391 1.21315 1.20374 1.21348 0.92794 0.90886 1.50113 0.92986 1.17655 0.93072 0.92064 0.94941 0.95937 1.21161 0.99253 0.94943 0.98838 1.21827 1.00347 0.97641 0.97151 1.21851 0.96571 0.93491 0.88808 1.48297 1.48770 1.30010 1.06624 1.22465 0.82601 0.87780 0.82050 1.90674 1.51245 1.58118 1.43776 1.21738 0.93489 0.85994 1.00333 1.21258 0.99201 0.96099 0.98705 0.92940 0.92959 0.93733 0.91960 0.91575 0.91081 0.92576 0.87063 0.91524 0.91857 0.94620 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 11.20 55.43 0.62 -24.91 16 2 C 0.06 1.62 5.26 -17.82 -0.09 1.53 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.12 8.33 -34.44 -0.29 -14.40 16 8 H 0.05 1.42 7.60 -52.49 -0.40 1.02 16 9 C 0.04 1.00 1.58 -94.83 -0.15 0.85 16 10 H 0.02 0.59 7.36 -51.93 -0.38 0.21 16 11 C -0.10 -2.07 4.89 -28.02 -0.14 -2.21 16 12 C -0.13 -2.03 5.71 -27.30 -0.16 -2.18 16 13 C 0.12 1.54 6.23 -2.94 -0.02 1.52 16 14 N -0.60 -10.19 2.24 -177.63 -0.40 -10.59 16 15 C 0.48 8.12 11.65 54.05 0.63 8.75 16 16 O -0.56 -12.12 16.61 5.56 0.09 -12.03 16 17 C 0.11 2.15 5.38 -4.09 -0.02 2.12 16 18 C -0.11 -2.76 4.80 -28.59 -0.14 -2.90 16 19 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 20 H 0.05 1.05 7.74 -51.93 -0.40 0.65 16 21 H 0.04 0.89 7.48 -51.93 -0.39 0.50 16 22 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.07 1.09 7.32 -51.93 -0.38 0.71 16 24 H 0.07 0.75 7.75 -51.93 -0.40 0.35 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.11 1.34 7.85 -52.48 -0.41 0.93 16 27 H 0.07 1.39 7.30 -51.93 -0.38 1.01 16 28 H 0.06 1.21 8.07 -51.93 -0.42 0.80 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 2.91 5.71 -51.93 -0.30 2.61 16 LS Contribution 241.63 15.07 3.64 3.64 Total: -1.00 -30.95 241.63 -5.70 -36.64 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.26 Total: -2.37 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -0.37 Total: -6.92 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.22 Total: -35.50 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.95 -5.70 -36.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259681593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.481 kcal (2) G-P(sol) polarization free energy of solvation -30.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds