Wall clock time and date at job start Mon Mar 30 2020 02:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99839 * 2 1 4 4 H 1.48506 * 109.47334 * 239.99779 * 3 2 1 5 5 H 1.48502 * 109.47418 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47108 * 120.00105 * 3 2 1 7 7 C 1.37880 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00091 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99892 * 359.97438 * 7 2 1 10 10 H 1.09002 * 108.31940 * 57.61881 * 9 7 2 11 11 C 1.52566 * 108.51104 * 175.23549 * 9 7 2 12 12 C 1.50882 * 109.36098 * 206.26708 * 11 9 7 13 13 C 1.53948 * 110.09473 * 268.11499 * 12 11 9 14 14 N 1.47610 * 112.14412 * 40.55840 * 13 12 11 15 15 C 1.34765 * 118.64764 * 222.10984 * 14 13 12 16 16 O 1.21278 * 120.00511 * 180.02562 * 15 14 13 17 17 C 1.44582 * 122.70695 * 42.13460 * 14 13 12 18 18 C 1.47096 * 108.51484 * 299.99874 * 9 7 2 19 19 H 0.96995 * 119.99880 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.48973 * 326.22822 * 11 9 7 21 21 H 1.08994 * 109.49354 * 86.29951 * 11 9 7 22 22 H 1.08996 * 109.37291 * 147.92508 * 12 11 9 23 23 H 1.09003 * 109.36644 * 28.30018 * 12 11 9 24 24 H 1.09004 * 108.94986 * 279.87828 * 13 12 11 25 25 H 1.08995 * 108.95128 * 161.24470 * 13 12 11 26 26 H 1.08005 * 120.00147 * 0.02562 * 15 14 13 27 27 H 1.08999 * 109.44790 * 149.23575 * 17 14 13 28 28 H 1.09001 * 109.43004 * 29.29976 * 17 14 13 29 29 H 1.08994 * 109.32703 * 296.21004 * 18 9 7 30 30 H 1.09006 * 109.32477 * 55.68507 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5995 -2.5186 -0.8742 11 6 2.2574 -3.6395 -0.1213 12 6 1.5868 -4.8334 -0.7549 13 6 1.0077 -5.7545 0.3343 14 7 0.3793 -4.9923 1.4311 15 6 0.5933 -5.3913 2.7004 16 8 0.0886 -4.7834 3.6205 17 6 -0.4569 -3.8357 1.1998 18 6 0.4140 -2.5552 1.2077 19 1 -0.4850 0.8400 0.0004 20 1 3.0950 -3.3211 -0.7420 21 1 2.6211 -3.9102 0.8698 22 1 2.3167 -5.3868 -1.3456 23 1 0.7815 -4.4925 -1.4056 24 1 1.8110 -6.3668 0.7439 25 1 0.2606 -6.4083 -0.1156 26 1 1.2143 -6.2525 2.8984 27 1 -1.2086 -3.7682 1.9862 28 1 -0.9507 -3.9328 0.2329 29 1 1.0540 -2.5596 2.0900 30 1 -0.2333 -1.6788 1.2391 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259681593.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:11 Heat of formation + Delta-G solvation = -64.159748 kcal Electronic energy + Delta-G solvation = -13088.208161 eV Core-core repulsion = 10882.243495 eV Total energy + Delta-G solvation = -2205.964666 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.87277 -38.43747 -35.78026 -33.75663 -32.80312 -28.78345 -26.69967 -25.38440 -23.27388 -20.94141 -20.57696 -18.76372 -17.67202 -17.15012 -16.61347 -16.05975 -15.11750 -14.95688 -14.82485 -14.26821 -13.88850 -13.48357 -13.27687 -12.87553 -12.77127 -12.32887 -12.21750 -11.91291 -11.74454 -11.34406 -11.01818 -10.76078 -10.68715 -10.37570 -9.42480 -8.07976 -6.23427 1.37887 1.39704 1.46823 1.85508 2.37591 2.41747 3.16899 3.89963 4.03968 4.27281 4.42380 4.51237 4.57675 4.65475 4.82977 4.88222 5.03630 5.12333 5.28690 5.37672 5.51486 5.57346 5.68721 5.77969 6.07336 6.26991 6.43301 6.58164 6.92851 7.30837 7.44807 8.93603 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.047033 B = 0.011130 C = 0.010024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.178947 B = 2515.116481 C = 2792.608269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.008 3.992 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.048 0.952 9 C 0.042 3.958 10 H -0.003 1.003 11 C -0.097 4.097 12 C -0.127 4.127 13 C 0.113 3.887 14 N -0.606 5.606 15 C 0.479 3.521 16 O -0.617 6.617 17 C 0.122 3.878 18 C -0.103 4.103 19 H 0.260 0.740 20 H 0.044 0.956 21 H 0.043 0.957 22 H 0.099 0.901 23 H 0.050 0.950 24 H 0.114 0.886 25 H 0.086 0.914 26 H 0.179 0.821 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.008 0.992 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -12.438 -1.573 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.202 1.202 7 C -0.576 4.576 8 H 0.066 0.934 9 C 0.024 3.976 10 H 0.015 0.985 11 C -0.134 4.134 12 C -0.165 4.165 13 C -0.008 4.008 14 N -0.339 5.339 15 C 0.251 3.749 16 O -0.497 6.497 17 C -0.002 4.002 18 C -0.142 4.142 19 H 0.069 0.931 20 H 0.063 0.937 21 H 0.062 0.938 22 H 0.117 0.883 23 H 0.069 0.931 24 H 0.132 0.868 25 H 0.104 0.896 26 H 0.195 0.805 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.027 0.973 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.366 -12.009 -1.143 12.293 hybrid contribution 0.238 1.534 -0.001 1.552 sum 2.604 -10.475 -1.144 10.855 Atomic orbital electron populations 1.69945 1.07055 1.27041 1.51682 1.25744 0.95717 1.02378 0.95139 0.85740 0.78511 0.79481 0.78716 1.19339 1.20950 1.20193 1.21818 0.92944 0.92787 1.50011 0.93397 1.17663 0.93438 0.92984 0.93561 0.98493 1.21006 0.97975 0.95258 0.99205 1.21768 1.00485 0.96450 0.97833 1.22162 0.98511 0.92824 0.87309 1.48434 1.48275 1.28907 1.08262 1.23595 0.81898 0.88481 0.80911 1.90663 1.53427 1.60159 1.45498 1.21270 0.92945 0.85768 1.00234 1.20996 0.98610 0.97155 0.97413 0.93094 0.93707 0.93776 0.88256 0.93110 0.86817 0.89573 0.80541 0.92927 0.91050 0.97300 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.22 11.20 21.45 0.24 -53.98 16 2 C 0.01 0.47 5.26 84.65 0.45 0.91 16 3 Si 0.95 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 7 C -0.54 -30.25 8.33 25.60 0.21 -30.04 16 8 H 0.05 2.66 7.60 -2.91 -0.02 2.63 16 9 C 0.04 2.08 1.58 -13.52 -0.02 2.06 16 10 H 0.00 -0.16 7.36 -2.39 -0.02 -0.18 16 11 C -0.10 -3.72 4.89 29.76 0.15 -3.57 16 12 C -0.13 -3.49 5.71 30.23 0.17 -3.32 16 13 C 0.11 2.44 6.23 86.49 0.54 2.98 16 14 N -0.61 -18.93 2.24 -834.29 -1.87 -20.80 16 15 C 0.48 14.76 11.65 129.79 1.51 16.27 16 16 O -0.62 -26.29 16.61 -3.02 -0.05 -26.34 16 17 C 0.12 4.91 5.38 87.37 0.47 5.38 16 18 C -0.10 -5.15 4.80 29.39 0.14 -5.01 16 19 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 20 H 0.04 1.75 7.74 -2.39 -0.02 1.74 16 21 H 0.04 1.68 7.48 -2.39 -0.02 1.66 16 22 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.05 1.56 7.32 -2.39 -0.02 1.54 16 24 H 0.11 1.59 7.75 -2.39 -0.02 1.58 16 25 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.18 3.21 7.85 -2.91 -0.02 3.18 16 27 H 0.05 2.25 7.30 -2.39 -0.02 2.23 16 28 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 3.90 5.71 -2.38 -0.01 3.89 16 Total: -1.00 -70.93 241.63 5.07 -65.86 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.11 Total: 2.71 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 3.62 Total: -14.34 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -1.63 Total: -74.78 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.05 Total: -26.34 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -70.93 5.07 -65.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259681593.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.702 kcal (2) G-P(sol) polarization free energy of solvation -70.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds