Wall clock time and date at job start Mon Mar 30 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48504 * 109.47138 * 269.99430 * 3 2 1 5 5 H 1.48502 * 109.47455 * 29.99979 * 3 2 1 6 6 H 1.48504 * 109.47149 * 149.99743 * 3 2 1 7 7 C 1.37880 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99577 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.45492 * 57.39159 * 9 7 2 11 11 C 1.55086 * 110.63066 * 294.70669 * 9 7 2 12 12 C 1.55306 * 104.90333 * 238.40421 * 11 9 7 13 13 N 1.46897 * 103.36324 * 335.88650 * 12 11 9 14 14 C 1.45642 * 117.35214 * 162.51830 * 13 12 11 15 15 C 1.53760 * 107.39163 * 180.24758 * 14 13 12 16 16 O 1.42796 * 111.06801 * 54.30097 * 15 14 13 17 17 C 1.43709 * 115.60785 * 306.53867 * 16 15 14 18 18 C 1.48947 * 103.51838 * 42.77366 * 13 12 11 19 19 H 1.08997 * 110.90235 * 73.13115 * 18 13 12 20 20 H 0.97000 * 119.99714 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.34858 * 357.25512 * 11 9 7 22 22 H 1.08991 * 110.35495 * 119.43864 * 11 9 7 23 23 H 1.08995 * 110.64137 * 94.35382 * 12 11 9 24 24 H 1.08996 * 110.63974 * 217.25388 * 12 11 9 25 25 H 1.08994 * 109.87345 * 299.72132 * 14 13 12 26 26 H 1.08997 * 109.86697 * 60.77612 * 14 13 12 27 27 H 1.09000 * 109.17136 * 174.69574 * 15 14 13 28 28 H 1.09002 * 109.17186 * 293.95130 * 15 14 13 29 29 H 1.09002 * 109.91820 * 297.11099 * 17 16 15 30 30 H 1.08999 * 109.92160 * 176.01531 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5843 -2.5540 -0.8600 11 6 0.4519 -2.6687 1.3188 12 6 0.9841 -3.9882 1.9415 13 7 1.5050 -4.7248 0.7823 14 6 2.4210 -5.8261 1.0457 15 6 2.8235 -6.4240 -0.3125 16 8 3.3463 -5.4187 -1.1813 17 6 2.5081 -4.2674 -1.3743 18 6 2.2247 -3.6807 0.0010 19 1 3.1572 -3.4016 0.4916 20 1 -0.4850 0.8401 0.0004 21 1 0.6425 -1.8298 1.9881 22 1 -0.6143 -2.7501 1.1080 23 1 1.7813 -3.7819 2.6556 24 1 0.1753 -4.5410 2.4194 25 1 3.3054 -5.4564 1.5645 26 1 1.9246 -6.5839 1.6518 27 1 3.5824 -7.1905 -0.1553 28 1 1.9481 -6.8774 -0.7775 29 1 1.5739 -4.5639 -1.8512 30 1 3.0233 -3.5323 -1.9925 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259787181.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:10 Heat of formation + Delta-G solvation = -41.373199 kcal Electronic energy + Delta-G solvation = -13147.042847 eV Core-core repulsion = 10942.066280 eV Total energy + Delta-G solvation = -2204.976567 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.43858 -36.20116 -33.26175 -31.41371 -29.35419 -27.99486 -24.77613 -23.53711 -21.92775 -19.96300 -19.20049 -16.40817 -15.79172 -15.23297 -14.67133 -14.65268 -14.42861 -13.87167 -13.14042 -12.69953 -12.20417 -12.02494 -11.38588 -11.00290 -10.82036 -10.56850 -10.52702 -10.30109 -9.94444 -9.89397 -9.36886 -9.03129 -8.79524 -8.41274 -7.82066 -6.04368 -4.08293 3.29257 3.36243 3.39385 4.24396 4.39582 4.61473 5.26089 5.28053 5.42438 5.54257 5.81210 5.85680 5.94621 5.99151 6.09353 6.16868 6.25089 6.43681 6.61380 6.72283 7.06806 7.13536 7.44890 7.60759 7.67020 7.75249 7.88043 7.97055 8.42611 8.94627 9.56304 11.05194 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051924 B = 0.011163 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.122610 B = 2507.637667 C = 2803.306984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.062 3.938 10 H 0.038 0.962 11 C -0.092 4.092 12 C 0.042 3.958 13 N -0.534 5.534 14 C 0.018 3.982 15 C 0.073 3.927 16 O -0.401 6.401 17 C 0.081 3.919 18 C 0.035 3.965 19 H 0.051 0.949 20 H 0.261 0.739 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.028 0.972 24 H 0.062 0.938 25 H 0.034 0.966 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 -8.380 1.320 8.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.043 3.957 10 H 0.057 0.943 11 C -0.130 4.130 12 C -0.086 4.086 13 N -0.259 5.259 14 C -0.111 4.111 15 C -0.005 4.005 16 O -0.320 6.320 17 C 0.005 3.995 18 C -0.073 4.073 19 H 0.069 0.931 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.068 0.932 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.052 0.948 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.465 -8.540 0.989 8.943 hybrid contribution 0.808 1.241 0.796 1.681 sum 3.273 -7.299 1.785 8.196 Atomic orbital electron populations 1.69979 1.05864 1.26586 1.49975 1.24962 0.94824 0.99009 0.94993 0.86633 0.79883 0.83556 0.78173 1.20601 1.21256 1.19950 1.21165 0.92754 0.90314 1.51387 0.92609 1.19133 0.92130 0.90152 0.94328 0.94346 1.22537 0.98904 0.92718 0.98880 1.22917 0.97769 0.96242 0.91632 1.63974 1.33473 1.08537 1.19921 1.22659 0.95225 0.95583 0.97636 1.22528 0.98445 0.90113 0.89403 1.87816 1.46840 1.30970 1.66345 1.22606 0.94302 0.85967 0.96597 1.23278 0.97548 0.92711 0.93736 0.93102 0.92968 0.91735 0.93209 0.95368 0.91962 0.94766 0.90715 0.89650 0.93168 0.92583 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.17 12.71 55.43 0.70 -24.47 16 2 C 0.06 1.76 5.23 -17.82 -0.09 1.67 16 3 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.02 8.31 -34.44 -0.29 -14.30 16 8 H 0.06 1.50 7.62 -52.49 -0.40 1.10 16 9 C 0.06 1.54 2.55 -90.62 -0.23 1.30 16 10 H 0.04 1.04 8.02 -51.93 -0.42 0.62 16 11 C -0.09 -2.15 5.96 -24.41 -0.15 -2.30 16 12 C 0.04 0.83 6.74 -2.60 -0.02 0.82 16 13 N -0.53 -10.52 4.86 -224.47 -1.09 -11.61 16 14 C 0.02 0.30 6.09 -4.11 -0.03 0.27 16 15 C 0.07 1.12 7.02 37.55 0.26 1.39 16 16 O -0.40 -7.45 10.75 -35.23 -0.38 -7.83 16 17 C 0.08 1.60 6.64 36.74 0.24 1.84 16 18 C 0.03 0.76 2.13 -66.94 -0.14 0.61 16 19 H 0.05 1.18 7.67 -51.93 -0.40 0.78 16 20 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 21 H 0.06 1.63 7.61 -51.93 -0.40 1.23 16 22 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 23 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 26 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 LS Contribution 242.28 15.07 3.65 3.65 Total: -1.00 -28.43 242.28 -7.11 -35.55 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -4.54 Total: -2.65 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -0.43 Total: -8.69 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.39 Total: -36.08 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -0.38 Total: -7.83 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.43 -7.11 -35.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787181.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.826 kcal (2) G-P(sol) polarization free energy of solvation -28.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds