Wall clock time and date at job start Mon Mar 30 2020 02:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48504 * 109.47138 * 269.99430 * 3 2 1 5 5 H 1.48502 * 109.47455 * 29.99979 * 3 2 1 6 6 H 1.48504 * 109.47149 * 149.99743 * 3 2 1 7 7 C 1.37880 * 120.00255 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99577 * 0.02562 * 7 2 1 10 10 H 1.09004 * 110.45492 * 57.39159 * 9 7 2 11 11 C 1.55086 * 110.63066 * 294.70669 * 9 7 2 12 12 C 1.55306 * 104.90333 * 238.40421 * 11 9 7 13 13 N 1.46897 * 103.36324 * 335.88650 * 12 11 9 14 14 C 1.45642 * 117.35214 * 162.51830 * 13 12 11 15 15 C 1.53760 * 107.39163 * 180.24758 * 14 13 12 16 16 O 1.42796 * 111.06801 * 54.30097 * 15 14 13 17 17 C 1.43709 * 115.60785 * 306.53867 * 16 15 14 18 18 C 1.48947 * 103.51838 * 42.77366 * 13 12 11 19 19 H 1.08997 * 110.90235 * 73.13115 * 18 13 12 20 20 H 0.97000 * 119.99714 * 359.97438 * 1 2 3 21 21 H 1.08998 * 110.34858 * 357.25512 * 11 9 7 22 22 H 1.08991 * 110.35495 * 119.43864 * 11 9 7 23 23 H 1.08995 * 110.64137 * 94.35382 * 12 11 9 24 24 H 1.08996 * 110.63974 * 217.25388 * 12 11 9 25 25 H 1.08994 * 109.87345 * 299.72132 * 14 13 12 26 26 H 1.08997 * 109.86697 * 60.77612 * 14 13 12 27 27 H 1.09000 * 109.17136 * 174.69574 * 15 14 13 28 28 H 1.09002 * 109.17186 * 293.95130 * 15 14 13 29 29 H 1.09002 * 109.91820 * 297.11099 * 17 16 15 30 30 H 1.08999 * 109.92160 * 176.01531 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.5843 -2.5540 -0.8600 11 6 0.4519 -2.6687 1.3188 12 6 0.9841 -3.9882 1.9415 13 7 1.5050 -4.7248 0.7823 14 6 2.4210 -5.8261 1.0457 15 6 2.8235 -6.4240 -0.3125 16 8 3.3463 -5.4187 -1.1813 17 6 2.5081 -4.2674 -1.3743 18 6 2.2247 -3.6807 0.0010 19 1 3.1572 -3.4016 0.4916 20 1 -0.4850 0.8401 0.0004 21 1 0.6425 -1.8298 1.9881 22 1 -0.6143 -2.7501 1.1080 23 1 1.7813 -3.7819 2.6556 24 1 0.1753 -4.5410 2.4194 25 1 3.3054 -5.4564 1.5645 26 1 1.9246 -6.5839 1.6518 27 1 3.5824 -7.1905 -0.1553 28 1 1.9481 -6.8774 -0.7775 29 1 1.5739 -4.5639 -1.8512 30 1 3.0233 -3.5323 -1.9925 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259787181.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:10 Heat of formation + Delta-G solvation = -61.069030 kcal Electronic energy + Delta-G solvation = -13147.896922 eV Core-core repulsion = 10942.066280 eV Total energy + Delta-G solvation = -2205.830642 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.00607 -37.77834 -35.14057 -33.14101 -31.01988 -29.68530 -26.63963 -25.17025 -23.45819 -21.68131 -20.92733 -18.40651 -17.29117 -16.79417 -16.51161 -16.20813 -16.00928 -15.45011 -14.71019 -14.35704 -14.08254 -13.61523 -13.08434 -12.89796 -12.53115 -12.38037 -12.26302 -11.99013 -11.77666 -11.39674 -11.13825 -10.83923 -10.60131 -10.48267 -9.38199 -8.14911 -6.25388 1.40957 1.41916 1.51750 2.41700 2.83420 3.12071 3.16857 3.91712 3.95199 4.16440 4.25134 4.31634 4.43940 4.51801 4.61562 4.70869 4.82046 4.87756 4.94309 5.01355 5.21917 5.31507 5.58044 5.69356 5.77482 5.92940 6.22835 6.31849 6.42069 6.84210 7.42625 8.94524 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.051924 B = 0.011163 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.122610 B = 2507.637667 C = 2803.306984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.017 3.983 3 Si 0.953 3.047 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.533 4.533 8 H 0.051 0.949 9 C 0.056 3.944 10 H 0.007 0.993 11 C -0.087 4.087 12 C 0.052 3.948 13 N -0.538 5.538 14 C 0.017 3.983 15 C 0.066 3.934 16 O -0.409 6.409 17 C 0.088 3.912 18 C 0.043 3.957 19 H 0.034 0.966 20 H 0.262 0.738 21 H 0.039 0.961 22 H 0.036 0.964 23 H 0.032 0.968 24 H 0.089 0.911 25 H 0.031 0.969 26 H 0.106 0.894 27 H 0.122 0.878 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -9.553 1.767 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.183 4.183 3 Si 0.779 3.221 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.069 0.931 9 C 0.037 3.963 10 H 0.025 0.975 11 C -0.126 4.126 12 C -0.075 4.075 13 N -0.264 5.264 14 C -0.112 4.112 15 C -0.011 4.011 16 O -0.329 6.329 17 C 0.012 3.988 18 C -0.066 4.066 19 H 0.052 0.948 20 H 0.071 0.929 21 H 0.058 0.942 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.107 0.893 25 H 0.050 0.950 26 H 0.124 0.876 27 H 0.140 0.860 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.317 -9.733 1.439 10.383 hybrid contribution 0.530 1.544 0.668 1.764 sum 3.847 -8.189 2.107 9.289 Atomic orbital electron populations 1.70092 1.07203 1.27389 1.50760 1.25712 0.95618 1.02292 0.94638 0.85635 0.78694 0.79466 0.78352 1.19968 1.20862 1.19426 1.21453 0.92736 0.91678 1.51296 0.93055 1.19053 0.92462 0.91079 0.93739 0.97457 1.22349 0.98063 0.94194 0.98026 1.22811 0.98599 0.94529 0.91572 1.63969 1.34189 1.08520 1.19685 1.22833 0.94709 0.94862 0.98776 1.22846 1.00126 0.89784 0.88308 1.87807 1.46896 1.30950 1.67202 1.22432 0.94497 0.86601 0.95288 1.23021 0.95858 0.92353 0.95331 0.94825 0.92917 0.94246 0.94499 0.94926 0.89276 0.95032 0.87583 0.86018 0.92311 0.92564 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.09 12.71 21.45 0.27 -52.82 16 2 C 0.02 0.94 5.23 84.66 0.44 1.38 16 3 Si 0.95 43.55 29.54 68.60 2.03 45.57 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.53 -29.45 8.31 25.60 0.21 -29.24 16 8 H 0.05 2.81 7.62 -2.91 -0.02 2.79 16 9 C 0.06 2.84 2.55 -10.79 -0.03 2.82 16 10 H 0.01 0.41 8.02 -2.39 -0.02 0.39 16 11 C -0.09 -4.18 5.96 32.10 0.19 -3.99 16 12 C 0.05 2.01 6.74 87.10 0.59 2.59 16 13 N -0.54 -20.26 4.86 -864.10 -4.20 -24.46 16 14 C 0.02 0.49 6.09 86.80 0.53 1.02 16 15 C 0.07 1.81 7.02 72.24 0.51 2.32 16 16 O -0.41 -14.38 10.75 -148.98 -1.60 -15.98 16 17 C 0.09 3.42 6.64 71.71 0.48 3.90 16 18 C 0.04 1.83 2.13 44.28 0.09 1.93 16 19 H 0.03 1.56 7.67 -2.39 -0.02 1.54 16 20 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 21 H 0.04 2.03 7.61 -2.39 -0.02 2.01 16 22 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 25 H 0.03 0.97 8.05 -2.39 -0.02 0.95 16 26 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 Total: -1.00 -60.84 242.28 0.61 -60.23 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: 1.10 Total: 4.72 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: 3.01 Total: -17.27 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -3.93 Total: -77.28 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: -1.60 Total: -15.98 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Total: -60.84 0.61 -60.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259787181.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.837 kcal (2) G-P(sol) polarization free energy of solvation -60.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds