Wall clock time and date at job start Mon Mar 30 2020 02:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47184 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.47131 * 180.02562 * 11 10 9 13 13 H 1.08999 * 110.21802 * 55.47217 * 12 11 10 14 14 C 1.54479 * 110.24831 * 177.49870 * 12 11 10 15 15 C 1.54625 * 101.76655 * 144.41294 * 14 12 11 16 16 C 1.51276 * 104.19748 * 335.20294 * 15 14 12 17 17 O 1.21283 * 124.94313 * 196.23637 * 16 15 14 18 18 N 1.34423 * 110.11728 * 16.24888 * 16 15 14 19 19 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 21 21 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 22 22 H 1.09001 * 109.47002 * 299.99404 * 10 9 7 23 23 H 1.09001 * 109.46801 * 59.99558 * 10 9 7 24 24 H 1.09001 * 109.46832 * 299.99679 * 11 10 9 25 25 H 1.09004 * 109.47261 * 59.99697 * 11 10 9 26 26 H 1.09004 * 110.96582 * 262.53638 * 14 12 11 27 27 H 1.09004 * 110.96789 * 26.28934 * 14 12 11 28 28 H 1.09007 * 110.48542 * 216.51806 * 15 14 12 29 29 H 1.09003 * 110.59926 * 93.93645 * 15 14 12 30 30 H 0.96997 * 124.34798 * 180.38417 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4805 -4.9871 0.0012 12 6 2.4747 -6.1499 0.0018 13 1 3.1601 -6.0591 0.8445 14 6 1.7216 -7.4972 0.0657 15 6 2.6128 -8.3989 -0.8195 16 6 3.3206 -7.4306 -1.7414 17 8 3.8931 -7.7386 -2.7653 18 7 3.2229 -6.1791 -1.2605 19 1 -0.4850 -0.8401 -0.0004 20 1 0.6242 -2.5567 0.8904 21 1 0.6248 -2.5571 -0.8896 22 1 2.8720 -3.6043 -0.8895 23 1 2.8721 -3.6042 0.8905 24 1 0.8542 -5.0446 0.8914 25 1 0.8534 -5.0451 -0.8886 26 1 1.6803 -7.8728 1.0882 27 1 0.7203 -7.4047 -0.3550 28 1 2.0006 -9.0943 -1.3938 29 1 3.3348 -8.9419 -0.2095 30 1 3.5989 -5.3961 -1.6922 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259792997.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:36 Heat of formation + Delta-G solvation = -93.651232 kcal Electronic energy + Delta-G solvation = -12181.510044 eV Core-core repulsion = 9974.266532 eV Total energy + Delta-G solvation = -2207.243512 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.31487 -38.12338 -36.29151 -34.02600 -32.18211 -30.22872 -26.89002 -24.61092 -22.48529 -22.12327 -21.17138 -18.95727 -18.17916 -17.51301 -16.10869 -15.67745 -15.59565 -15.33787 -14.72068 -14.51587 -14.09665 -13.73302 -13.34830 -13.05943 -12.94000 -12.47545 -12.06949 -11.96955 -11.93152 -11.55044 -11.47278 -10.95410 -10.61919 -10.55393 -10.10605 -8.70038 -6.40738 1.51237 1.55711 1.59341 1.78762 2.43806 2.55494 3.14465 3.40265 3.62252 3.80694 4.14854 4.20165 4.35137 4.42691 4.68471 4.74075 4.85318 4.93820 5.04398 5.12141 5.14571 5.25927 5.46829 5.55286 5.82366 5.99766 6.07218 6.18373 6.57905 7.20421 7.41352 8.70909 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.066925 B = 0.006328 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.277853 B = 4423.539085 C = 4669.540450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.041 4.041 3 Si 1.116 2.884 4 H -0.283 1.283 5 H -0.271 1.271 6 H -0.267 1.267 7 C -0.622 4.622 8 H 0.049 0.951 9 C 0.005 3.995 10 C -0.095 4.095 11 C -0.119 4.119 12 C 0.130 3.870 13 H 0.097 0.903 14 C -0.119 4.119 15 C -0.145 4.145 16 C 0.504 3.496 17 O -0.598 6.598 18 N -0.725 5.725 19 H 0.255 0.745 20 H -0.007 1.007 21 H -0.016 1.016 22 H 0.043 0.957 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.123 0.877 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.126 0.874 30 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 -14.614 3.354 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.238 4.238 3 Si 0.937 3.063 4 H -0.208 1.208 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.660 4.660 8 H 0.067 0.933 9 C -0.032 4.032 10 C -0.133 4.133 11 C -0.157 4.157 12 C 0.026 3.974 13 H 0.115 0.885 14 C -0.157 4.157 15 C -0.185 4.185 16 C 0.292 3.708 17 O -0.480 6.480 18 N -0.378 5.378 19 H 0.065 0.935 20 H 0.011 0.989 21 H 0.002 0.998 22 H 0.062 0.938 23 H 0.075 0.925 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.141 0.859 27 H 0.105 0.895 28 H 0.130 0.870 29 H 0.144 0.856 30 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.825 -13.250 2.912 14.095 hybrid contribution 0.127 -0.940 -0.457 1.053 sum 3.952 -14.190 2.455 14.933 Atomic orbital electron populations 1.70923 1.07956 1.29866 1.48897 1.27436 0.96647 1.06941 0.92788 0.82948 0.74155 0.71167 0.78006 1.20850 1.19682 1.19198 1.22573 0.94699 0.93804 1.54950 0.93260 1.19209 0.95267 0.94654 0.94044 1.21366 0.97785 0.93687 1.00422 1.21920 0.97877 0.93049 1.02859 1.21946 0.93378 0.96329 0.85742 0.88491 1.22762 0.98609 0.91415 1.02873 1.22381 1.00463 0.97593 0.98057 1.21745 0.78791 0.85295 0.84925 1.90701 1.47770 1.81914 1.27615 1.46670 1.56047 1.09286 1.25803 0.93510 0.98886 0.99806 0.93800 0.92548 0.89505 0.92640 0.85893 0.89544 0.87023 0.85635 0.75725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.62 13.65 21.45 0.29 -58.33 16 2 C -0.04 -2.39 5.46 84.65 0.46 -1.93 16 3 Si 1.12 50.42 29.90 68.60 2.05 52.47 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 7 C -0.62 -35.64 9.11 25.60 0.23 -35.40 16 8 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 9 C 0.01 0.27 4.28 29.85 0.13 0.40 16 10 C -0.09 -3.58 5.06 30.60 0.15 -3.43 16 11 C -0.12 -3.30 4.83 30.59 0.15 -3.15 16 12 C 0.13 2.72 3.50 45.44 0.16 2.88 16 13 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 14 C -0.12 -1.68 6.69 31.65 0.21 -1.47 16 15 C -0.15 -2.36 6.86 30.58 0.21 -2.15 16 16 C 0.50 13.73 8.43 87.90 0.74 14.47 16 17 O -0.60 -21.97 18.03 -3.04 -0.05 -22.02 16 18 N -0.72 -18.69 5.77 -439.43 -2.54 -21.22 16 19 H 0.26 16.07 7.22 -92.71 -0.67 15.40 16 20 H -0.01 -0.38 8.01 -2.39 -0.02 -0.40 16 21 H -0.02 -0.90 8.01 -2.39 -0.02 -0.92 16 22 H 0.04 1.66 7.07 -2.39 -0.02 1.64 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.09 1.23 7.91 -2.38 -0.02 1.21 16 28 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.40 11.28 7.89 -92.71 -0.73 10.55 16 Total: -1.00 -72.86 253.74 2.69 -70.17 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 0.49 Total: 8.70 kcal Atomic # 6 Polarization: -32.22 SS G_CDS: 2.45 Total: -29.78 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -2.24 Total: -79.55 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: -0.05 Total: -22.02 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Total: -72.86 2.69 -70.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259792997.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.477 kcal (2) G-P(sol) polarization free energy of solvation -72.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds