Wall clock time and date at job start Mon Mar 30 2020 02:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99863 * 2 1 4 4 C 1.46893 * 111.00249 * 123.95572 * 2 1 3 5 5 C 1.50702 * 109.47352 * 170.00148 * 4 2 1 6 6 N 1.30420 * 128.65900 * 269.67790 * 5 4 2 7 7 O 1.20770 * 109.95009 * 179.81682 * 6 5 4 8 8 N 1.20933 * 116.14967 * 0.50158 * 7 6 5 9 9 C 1.32750 * 108.88071 * 359.69703 * 8 7 6 10 10 C 1.41594 * 128.83116 * 180.02562 * 9 8 7 11 11 H 1.07999 * 120.00094 * 179.97438 * 10 9 8 12 12 C 1.40074 * 119.99920 * 359.97202 * 10 9 8 13 13 N 1.30704 * 119.99844 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00125 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47022 * 90.00175 * 14 12 10 16 16 H 1.48497 * 109.47234 * 210.00271 * 14 12 10 17 17 H 1.48499 * 109.47068 * 330.00278 * 14 12 10 18 18 H 1.09002 * 109.47401 * 56.04417 * 1 2 3 19 19 H 1.09001 * 109.46874 * 296.04430 * 1 2 3 20 20 H 1.09004 * 109.46970 * 176.04563 * 1 2 3 21 21 H 1.09005 * 109.47361 * 59.99945 * 3 2 1 22 22 H 1.08997 * 109.47533 * 180.02562 * 3 2 1 23 23 H 1.08999 * 109.47597 * 300.00325 * 3 2 1 24 24 H 1.09009 * 109.47180 * 289.99861 * 4 2 1 25 25 H 1.08996 * 109.47374 * 50.00147 * 4 2 1 26 26 H 0.96999 * 120.00131 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 7 4.1205 -1.9235 0.3810 7 8 5.3113 -1.7322 0.4441 8 7 5.6601 -0.7303 1.0246 9 6 4.5820 -0.0818 1.4482 10 6 4.5036 1.1336 2.1703 11 1 3.5403 1.5377 2.4444 12 6 5.6755 1.8119 2.5291 13 7 5.6031 2.9336 3.1961 14 14 7.3416 1.1127 2.0556 15 1 7.7398 1.6397 0.7256 16 1 8.3517 1.5112 3.0686 17 1 7.2580 -0.3688 1.9963 18 1 -0.3634 0.5740 -0.8524 19 1 -0.3633 0.4512 0.9233 20 1 -0.3633 -1.0253 -0.0709 21 1 1.6459 1.8948 0.8900 22 1 3.0850 1.3425 -0.0005 23 1 1.6459 1.8949 -0.8899 24 1 1.7976 -0.2247 2.0628 25 1 1.5091 -1.7406 1.1755 26 1 6.4146 3.4031 3.4450 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259800625.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:33 Heat of formation + Delta-G solvation = 84.942318 kcal Electronic energy + Delta-G solvation = -12702.464130 eV Core-core repulsion = 10399.424672 eV Total energy + Delta-G solvation = -2303.039458 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -46.50923 -38.52246 -36.20169 -34.63823 -34.21031 -29.67105 -28.58530 -28.26889 -24.07235 -23.43736 -21.83372 -19.38953 -18.95885 -18.45508 -16.71499 -16.24821 -16.14851 -15.81851 -15.13564 -14.38300 -13.78227 -13.50925 -13.35337 -13.13379 -12.90677 -12.69279 -12.65825 -12.41367 -11.98519 -11.68002 -11.30364 -10.70966 -10.36563 -9.32982 -8.99123 -6.88814 0.84668 1.08715 1.34425 1.62793 1.67571 2.33660 2.94286 3.11702 3.28766 3.59622 3.92360 4.24079 4.33088 4.45930 4.54693 4.70297 4.78205 4.88295 5.02623 5.04626 5.15066 5.23563 5.95731 5.98457 6.12964 6.16889 6.55382 8.03006 8.61145 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.039855 B = 0.014427 C = 0.011288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.383953 B = 1940.326631 C = 2479.945655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.556 5.556 3 C 0.030 3.970 4 C 0.159 3.841 5 C -0.054 4.054 6 N -0.371 5.371 7 O 0.244 5.756 8 N -0.508 5.508 9 C 0.131 3.869 10 C -0.418 4.418 11 H 0.091 0.909 12 C 0.065 3.935 13 N -0.823 5.823 14 Si 0.930 3.070 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.194 1.194 18 H 0.082 0.918 19 H 0.033 0.967 20 H 0.080 0.920 21 H 0.028 0.972 22 H 0.047 0.953 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 -2.235 -2.484 7.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.282 5.282 3 C -0.118 4.118 4 C 0.030 3.970 5 C -0.221 4.221 6 N -0.095 5.095 7 O 0.053 5.947 8 N -0.269 5.269 9 C -0.016 4.016 10 C -0.457 4.457 11 H 0.109 0.891 12 C -0.155 4.155 13 N -0.451 5.451 14 Si 0.755 3.245 15 H -0.203 1.203 16 H -0.209 1.209 17 H -0.117 1.117 18 H 0.100 0.900 19 H 0.052 0.948 20 H 0.099 0.901 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.098 0.902 24 H 0.075 0.925 25 H 0.120 0.880 26 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.545 -3.220 -3.371 7.244 hybrid contribution -0.045 1.270 1.107 1.685 sum -5.589 -1.950 -2.264 6.338 Atomic orbital electron populations 1.22457 0.84805 1.03301 1.01502 1.61969 1.09655 1.14204 1.42365 1.22370 1.00361 0.88347 1.00737 1.20052 0.84683 0.99633 0.92615 1.25852 0.99048 0.93073 1.04088 1.74184 0.93565 1.24088 1.17677 1.84641 1.17200 1.35648 1.57255 1.76119 1.21306 1.03430 1.26013 1.23162 0.86415 0.96057 0.95929 1.18525 0.96005 1.01164 1.29956 0.89090 1.26498 1.04159 0.93571 0.91293 1.69505 1.33753 1.13517 1.28349 0.85991 0.76200 0.84810 0.77487 1.20306 1.20859 1.11716 0.89973 0.94823 0.90112 0.95378 0.93433 0.90207 0.92524 0.87975 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 9.57 127.69 1.22 1.86 15 2 N -0.56 -18.56 5.01 -953.46 -4.78 -23.33 15 3 C 0.03 1.06 9.27 127.69 1.18 2.24 15 4 C 0.16 5.71 5.59 85.56 0.48 6.19 15 5 C -0.05 -2.42 6.55 45.40 0.30 -2.13 15 6 N -0.37 -17.28 12.18 -50.74 -0.62 -17.90 15 7 O 0.24 11.97 11.64 140.90 1.64 13.61 15 8 N -0.51 -26.11 7.20 -53.54 -0.39 -26.50 15 9 C 0.13 6.61 6.00 42.46 0.25 6.86 15 10 C -0.42 -21.82 9.12 23.54 0.21 -21.60 15 11 H 0.09 4.81 8.04 -2.91 -0.02 4.79 15 12 C 0.07 3.38 5.52 85.31 0.47 3.85 15 13 N -0.82 -42.51 13.92 21.84 0.30 -42.21 15 14 Si 0.93 43.08 26.73 68.60 1.83 44.91 15 15 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 16 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 17 H -0.19 -9.32 5.20 99.48 0.52 -8.80 15 18 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 19 H 0.03 0.75 8.14 -2.39 -0.02 0.73 15 20 H 0.08 1.68 8.12 -2.38 -0.02 1.66 15 21 H 0.03 0.97 8.14 -2.38 -0.02 0.95 15 22 H 0.05 2.03 5.55 -2.39 -0.01 2.02 15 23 H 0.08 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.06 2.02 8.12 -2.38 -0.02 2.00 15 25 H 0.10 3.20 8.06 -2.39 -0.02 3.18 15 26 H 0.30 14.04 8.29 -92.71 -0.77 13.27 15 Total: -1.00 -57.31 226.46 3.11 -54.20 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: 0.99 Total: -0.05 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 4.12 Total: -2.73 kcal Atomic # 7 Polarization: -104.46 SS G_CDS: -5.48 Total: -109.94 kcal Atomic # 8 Polarization: 11.97 SS G_CDS: 1.64 Total: 13.61 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.83 Total: 44.91 kcal Total: -57.31 3.11 -54.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800625.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.140 kcal (2) G-P(sol) polarization free energy of solvation -57.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds