Wall clock time and date at job start Mon Mar 30 2020 02:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86793 * 120.00421 * 2 1 4 4 H 1.48502 * 109.47447 * 264.84761 * 3 2 1 5 5 H 1.48504 * 109.46785 * 24.84602 * 3 2 1 6 6 H 1.48501 * 109.47145 * 144.84551 * 3 2 1 7 7 C 1.37879 * 119.99370 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00538 * 4.92671 * 7 2 1 9 9 C 1.50704 * 119.99897 * 184.92168 * 7 2 1 10 10 H 1.09000 * 109.18016 * 335.45780 * 9 7 2 11 11 C 1.47087 * 109.32759 * 95.01919 * 9 7 2 12 12 C 1.52565 * 114.32574 * 183.06446 * 11 9 7 13 13 C 1.50884 * 109.36142 * 274.99486 * 12 11 9 14 14 C 1.53953 * 110.09748 * 91.88510 * 13 12 11 15 15 N 1.47613 * 112.13765 * 319.43385 * 14 13 12 16 16 C 1.34773 * 118.64142 * 137.86884 * 15 14 13 17 17 O 1.21279 * 120.00310 * 174.94960 * 16 15 14 18 18 C 1.44574 * 122.71185 * 317.84836 * 15 14 13 19 19 H 0.97003 * 119.99783 * 359.97438 * 1 2 3 20 20 H 1.09000 * 108.50955 * 61.81143 * 11 9 7 21 21 H 1.08994 * 108.51657 * 304.31933 * 11 9 7 22 22 H 1.08999 * 109.49111 * 34.95783 * 12 11 9 23 23 H 1.09000 * 109.49303 * 155.00319 * 12 11 9 24 24 H 1.09001 * 109.36634 * 212.07378 * 13 12 11 25 25 H 1.08993 * 109.37087 * 331.81883 * 13 12 11 26 26 H 1.09000 * 108.95067 * 80.11977 * 14 13 12 27 27 H 1.08995 * 108.95016 * 198.75320 * 14 13 12 28 28 H 1.07998 * 120.00039 * 354.95740 * 16 15 14 29 29 H 1.09006 * 109.44726 * 210.78929 * 18 15 14 30 30 H 1.09003 * 109.45037 * 330.73732 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.6057 1.9835 -1.3944 5 1 1.3965 2.6816 0.5883 6 1 3.4881 1.4739 0.8061 7 6 2.0044 -1.1941 0.0005 8 1 1.4674 -2.1278 -0.0794 9 6 3.5073 -1.1966 0.1125 10 1 3.8948 -0.2434 -0.2472 11 6 3.8902 -1.3774 1.5211 12 6 5.3935 -1.3236 1.7756 13 6 5.9907 -2.6882 1.5353 14 6 6.4657 -2.8083 0.0758 15 7 5.5166 -2.1898 -0.8707 16 6 6.0059 -1.4510 -1.8861 17 8 5.2560 -1.0079 -2.7299 18 6 4.0839 -2.3443 -0.7535 19 1 -0.4850 0.8401 0.0004 20 1 3.5162 -2.3435 1.8601 21 1 3.4109 -0.5977 2.1129 22 1 5.8513 -0.6021 1.0989 23 1 5.5773 -1.0223 2.8069 24 1 6.8386 -2.8346 2.2045 25 1 5.2385 -3.4519 1.7327 26 1 7.4341 -2.3179 -0.0228 27 1 6.5779 -3.8632 -0.1743 28 1 7.0659 -1.2536 -1.9484 29 1 3.6332 -2.3126 -1.7455 30 1 3.8593 -3.3016 -0.2831 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259818344.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:17 Heat of formation + Delta-G solvation = -44.118934 kcal Electronic energy + Delta-G solvation = -13182.399214 eV Core-core repulsion = 10977.303584 eV Total energy + Delta-G solvation = -2205.095631 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.52069 -36.95007 -33.87556 -32.74650 -31.32777 -26.87953 -25.82523 -23.63740 -21.52905 -19.77934 -18.93057 -17.06795 -16.87201 -15.30398 -15.08917 -14.17491 -13.97231 -13.60502 -13.27901 -12.71341 -12.59321 -12.30720 -11.71072 -11.44927 -10.97234 -10.89855 -10.55621 -10.38711 -9.83620 -9.66172 -9.55228 -9.38043 -8.91576 -8.49899 -7.98793 -6.03639 -4.03014 3.16031 3.36828 3.43135 3.47274 3.60662 4.48836 4.93226 5.03000 5.17079 5.28912 5.41548 5.62332 5.76882 5.94296 6.07585 6.21305 6.31498 6.40940 6.51576 6.72836 6.77335 7.00887 7.08242 7.43370 7.55866 7.82739 7.89694 8.52973 8.63186 9.00563 9.60505 11.09617 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036357 B = 0.014451 C = 0.012655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.965767 B = 1937.106483 C = 2212.073259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.005 3.995 10 H 0.032 0.968 11 C -0.105 4.105 12 C -0.121 4.121 13 C -0.129 4.129 14 C 0.115 3.885 15 N -0.611 5.611 16 C 0.479 3.521 17 O -0.550 6.550 18 C 0.120 3.880 19 H 0.263 0.737 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.066 0.934 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.112 0.888 29 H 0.081 0.919 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.293 -4.541 3.030 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.128 4.128 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.014 4.014 10 H 0.050 0.950 11 C -0.143 4.143 12 C -0.159 4.159 13 C -0.167 4.167 14 C -0.009 4.009 15 N -0.346 5.346 16 C 0.248 3.752 17 O -0.426 6.426 18 C -0.002 4.002 19 H 0.073 0.927 20 H 0.069 0.931 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.710 -4.203 2.580 14.570 hybrid contribution 0.446 0.904 0.170 1.022 sum 14.156 -3.299 2.749 14.793 Atomic orbital electron populations 1.69905 1.06282 1.26936 1.50777 1.25011 0.94653 0.98926 0.94186 0.86850 0.79950 0.83673 0.79009 1.19970 1.21798 1.19183 1.20862 0.88720 0.94611 1.50677 0.90884 1.18711 0.96747 0.94639 0.91342 0.94979 1.20766 0.91947 1.01435 1.00134 1.21194 0.98543 0.96045 1.00123 1.21756 1.00918 0.99154 0.94884 1.21818 0.91784 0.97500 0.89750 1.48415 1.08283 1.50581 1.27369 1.22485 0.93775 0.78123 0.80837 1.90723 1.62006 1.50147 1.39691 1.21803 0.77101 0.99303 1.01986 0.92699 0.93144 0.93251 0.92619 0.93042 0.91523 0.91323 0.91010 0.92286 0.87194 0.90064 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.12 13.96 55.43 0.77 -27.35 16 2 C 0.07 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 22.82 26.87 -169.99 -4.57 18.25 16 4 H -0.27 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.27 -6.62 6.81 56.52 0.38 -6.24 16 7 C -0.51 -14.49 8.76 -34.44 -0.30 -14.79 16 8 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.01 0.13 1.68 -93.60 -0.16 -0.03 16 10 H 0.03 0.82 5.24 -51.93 -0.27 0.55 16 11 C -0.10 -2.15 4.37 -29.79 -0.13 -2.28 16 12 C -0.12 -1.94 5.51 -28.02 -0.15 -2.09 16 13 C -0.13 -1.61 5.71 -27.30 -0.16 -1.77 16 14 C 0.11 1.36 6.23 -2.94 -0.02 1.35 16 15 N -0.61 -10.19 2.24 -177.60 -0.40 -10.59 16 16 C 0.48 8.21 11.65 54.05 0.63 8.84 16 17 O -0.55 -12.48 16.58 5.56 0.09 -12.39 16 18 C 0.12 2.48 4.73 -4.07 -0.02 2.46 16 19 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 20 H 0.05 1.01 7.36 -51.93 -0.38 0.62 16 21 H 0.05 1.10 7.98 -51.93 -0.41 0.69 16 22 H 0.06 0.93 7.48 -51.93 -0.39 0.55 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.90 7.32 -51.93 -0.38 0.52 16 26 H 0.07 0.66 7.74 -51.93 -0.40 0.26 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.11 1.32 7.83 -52.49 -0.41 0.91 16 29 H 0.08 1.90 7.20 -51.93 -0.37 1.52 16 30 H 0.06 1.14 8.07 -51.93 -0.42 0.73 16 LS Contribution 241.77 15.07 3.64 3.64 Total: -1.00 -33.41 241.77 -5.14 -38.55 By element: Atomic # 1 Polarization: 0.39 SS G_CDS: -4.28 Total: -3.90 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.40 Total: -6.23 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.38 Total: -37.94 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -4.57 Total: 18.25 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -33.41 -5.14 -38.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259818344.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.569 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds