Wall clock time and date at job start Mon Mar 30 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99581 * 2 1 4 4 H 1.48496 * 109.46966 * 274.12273 * 3 2 1 5 5 H 1.48500 * 109.47112 * 34.12501 * 3 2 1 6 6 H 1.48503 * 109.46900 * 154.12556 * 3 2 1 7 7 C 1.37873 * 120.00526 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99873 * 354.73605 * 7 2 1 9 9 C 1.50700 * 120.00383 * 175.00572 * 7 2 1 10 10 H 1.09000 * 109.32338 * 35.41247 * 9 7 2 11 11 C 1.47099 * 109.32794 * 275.75832 * 9 7 2 12 12 C 1.52585 * 114.31487 * 176.74393 * 11 9 7 13 13 C 1.50879 * 109.19356 * 85.27786 * 12 11 9 14 14 C 1.53949 * 110.09021 * 268.08862 * 13 12 11 15 15 N 1.47598 * 112.14343 * 40.57009 * 14 13 12 16 16 C 1.34782 * 118.64031 * 222.10896 * 15 14 13 17 17 O 1.21283 * 120.00066 * 174.81223 * 16 15 14 18 18 C 1.44581 * 122.71987 * 42.12870 * 15 14 13 19 19 H 0.96995 * 120.00477 * 359.97438 * 1 2 3 20 20 H 1.08990 * 108.51338 * 298.18631 * 11 9 7 21 21 H 1.08997 * 108.50752 * 55.67876 * 11 9 7 22 22 H 1.09004 * 109.58602 * 325.35155 * 12 11 9 23 23 H 1.09007 * 109.57495 * 205.19313 * 12 11 9 24 24 H 1.09001 * 109.36732 * 147.90331 * 13 12 11 25 25 H 1.08997 * 109.27028 * 28.22150 * 13 12 11 26 26 H 1.08991 * 108.94777 * 279.87921 * 14 13 12 27 27 H 1.09008 * 108.94267 * 161.25092 * 14 13 12 28 28 H 1.07994 * 120.00144 * 354.82041 * 16 15 14 29 29 H 1.09000 * 109.44751 * 149.24095 * 18 15 14 30 30 H 1.08997 * 109.42193 * 29.31029 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4093 2.0968 -1.3964 5 1 1.4928 2.6260 0.7854 6 1 3.5875 1.4167 0.6110 7 6 2.0046 -1.1940 -0.0005 8 1 1.4681 -2.1274 0.0849 9 6 3.5073 -1.1963 -0.1141 10 1 3.9105 -0.3337 0.4163 11 6 3.8885 -1.1175 -1.5327 12 6 5.3925 -1.0334 -1.7754 13 6 5.9699 -2.4271 -1.7987 14 6 6.4423 -2.8275 -0.3893 15 7 5.5019 -2.3856 0.6591 16 6 6.0015 -1.8594 1.7949 17 8 5.2524 -1.4023 2.6321 18 6 4.0671 -2.4944 0.5182 19 1 -0.4850 0.8400 0.0004 20 1 3.5013 -1.9984 -2.0446 21 1 3.4203 -0.2348 -1.9682 22 1 5.8602 -0.4593 -0.9755 23 1 5.5814 -0.5455 -2.7317 24 1 6.8159 -2.4565 -2.4854 25 1 5.2059 -3.1274 -2.1364 26 1 7.4176 -2.3783 -0.2020 27 1 6.5393 -3.9122 -0.3434 28 1 7.0687 -1.8445 1.9595 29 1 3.6164 -2.6439 1.4993 30 1 3.8292 -3.3426 -0.1237 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259818347.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:19 Heat of formation + Delta-G solvation = -66.075022 kcal Electronic energy + Delta-G solvation = -13196.081203 eV Core-core repulsion = 10990.033485 eV Total energy + Delta-G solvation = -2206.047718 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.92537 -38.43002 -35.62374 -34.26984 -33.17952 -28.35545 -27.52803 -25.15956 -23.02826 -21.14367 -20.54531 -19.15719 -18.11463 -16.89123 -16.74311 -15.81310 -15.36504 -14.99122 -14.75238 -14.65906 -14.07990 -13.97050 -13.37231 -12.95116 -12.84993 -12.53227 -11.97687 -11.93523 -11.68503 -11.26840 -11.17123 -10.98237 -10.76789 -10.65347 -9.41929 -8.33043 -6.34873 1.23138 1.29624 1.40134 1.85999 2.29923 2.37728 3.03498 3.86102 3.99735 4.14410 4.29449 4.41101 4.44640 4.55629 4.80717 4.88578 4.93681 4.99847 5.16754 5.25521 5.40627 5.42512 5.53604 5.66791 5.78747 5.92985 6.28588 6.58501 6.73282 7.29718 7.34618 8.84014 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036973 B = 0.014286 C = 0.012697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.126399 B = 1959.463300 C = 2204.682526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.014 3.986 3 Si 0.934 3.066 4 H -0.260 1.260 5 H -0.289 1.289 6 H -0.257 1.257 7 C -0.511 4.511 8 H 0.035 0.965 9 C 0.000 4.000 10 H 0.019 0.981 11 C -0.105 4.105 12 C -0.116 4.116 13 C -0.126 4.126 14 C 0.108 3.892 15 N -0.612 5.612 16 C 0.475 3.525 17 O -0.615 6.615 18 C 0.138 3.862 19 H 0.265 0.735 20 H 0.051 0.949 21 H 0.021 0.979 22 H 0.050 0.950 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.060 0.940 26 H 0.113 0.887 27 H 0.085 0.915 28 H 0.182 0.818 29 H 0.040 0.960 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.121 -4.757 -4.668 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.550 4.550 8 H 0.054 0.946 9 C -0.020 4.020 10 H 0.037 0.963 11 C -0.143 4.143 12 C -0.154 4.154 13 C -0.164 4.164 14 C -0.013 4.013 15 N -0.345 5.345 16 C 0.246 3.754 17 O -0.495 6.495 18 C 0.014 3.986 19 H 0.074 0.926 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.127 0.873 25 H 0.079 0.921 26 H 0.131 0.869 27 H 0.103 0.897 28 H 0.197 0.803 29 H 0.059 0.941 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.592 -4.441 -4.265 18.638 hybrid contribution -0.774 0.876 0.175 1.182 sum 16.818 -3.564 -4.090 17.671 Atomic orbital electron populations 1.70043 1.07922 1.27801 1.53294 1.25791 0.95371 1.02610 0.94472 0.85893 0.79503 0.79653 0.78982 1.18510 1.21496 1.18223 1.21294 0.91814 0.93076 1.48818 0.94629 1.18759 0.93475 0.95580 0.94216 0.96335 1.20690 0.95954 1.00201 0.97411 1.21142 0.94413 0.98542 1.01275 1.21762 1.02182 0.95603 0.96845 1.22214 0.92097 1.00832 0.86155 1.48525 1.06771 1.60756 1.18445 1.23685 0.96023 0.75624 0.80036 1.90720 1.64420 1.47319 1.47001 1.21138 0.80242 0.97740 0.99509 0.92643 0.93007 0.96056 0.93093 0.91080 0.87343 0.92127 0.86856 0.89709 0.80289 0.94138 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.89 13.96 21.45 0.30 -61.59 16 2 C 0.01 0.88 5.47 84.65 0.46 1.34 16 3 Si 0.93 47.96 26.36 68.60 1.81 49.76 16 4 H -0.26 -12.45 7.11 99.48 0.71 -11.74 16 5 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.26 -13.07 5.93 99.48 0.59 -12.48 16 7 C -0.51 -30.50 8.78 25.60 0.22 -30.27 16 8 H 0.04 2.31 8.05 -2.91 -0.02 2.29 16 9 C 0.00 -0.02 1.64 -12.74 -0.02 -0.04 16 10 H 0.02 0.98 5.32 -2.39 -0.01 0.97 16 11 C -0.10 -4.24 4.24 28.62 0.12 -4.12 16 12 C -0.12 -3.32 5.52 29.77 0.16 -3.15 16 13 C -0.13 -2.51 5.71 30.23 0.17 -2.34 16 14 C 0.11 1.93 6.23 86.49 0.54 2.47 16 15 N -0.61 -18.47 2.24 -834.31 -1.87 -20.34 16 16 C 0.47 14.77 11.62 129.79 1.51 16.28 16 17 O -0.61 -27.77 16.66 -3.04 -0.05 -27.82 16 18 C 0.14 5.65 4.64 87.37 0.41 6.06 16 19 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 20 H 0.05 2.06 7.34 -2.39 -0.02 2.04 16 21 H 0.02 0.93 6.71 -2.39 -0.02 0.92 16 22 H 0.05 1.53 7.48 -2.39 -0.02 1.51 16 23 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 24 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.34 7.30 -2.39 -0.02 1.32 16 26 H 0.11 1.20 7.77 -2.39 -0.02 1.18 16 27 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 28 H 0.18 3.15 7.89 -2.91 -0.02 3.13 16 29 H 0.04 1.94 7.34 -2.39 -0.02 1.92 16 30 H 0.07 2.76 8.06 -2.39 -0.02 2.74 16 Total: -1.00 -79.00 239.19 4.76 -74.24 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: 0.99 Total: -0.48 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 3.58 Total: -13.77 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -1.57 Total: -81.93 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.05 Total: -27.82 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.81 Total: 49.76 kcal Total: -79.00 4.76 -74.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259818347.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.166 kcal (2) G-P(sol) polarization free energy of solvation -78.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds