Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47363 * 269.99746 * 3 2 1 5 5 H 1.48498 * 109.47069 * 30.00049 * 3 2 1 6 6 H 1.48504 * 109.46955 * 149.99769 * 3 2 1 7 7 C 1.37880 * 120.00470 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99226 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00413 * 179.97438 * 7 2 1 10 10 H 1.08994 * 107.85831 * 303.24329 * 9 7 2 11 11 C 1.54408 * 107.89081 * 186.68537 * 9 7 2 12 12 C 1.54840 * 110.06913 * 196.93516 * 11 9 7 13 13 C 1.50125 * 110.81895 * 321.07623 * 12 11 9 14 14 C 1.52520 * 105.41427 * 97.68427 * 13 12 11 15 15 C 1.46242 * 114.28036 * 270.59552 * 14 13 12 16 16 N 1.43435 * 108.15460 * 60.00430 * 9 7 2 17 17 C 1.34777 * 120.54029 * 33.30827 * 16 9 7 18 18 O 1.21283 * 120.00463 * 179.72102 * 17 16 9 19 19 H 0.96997 * 120.00124 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.43726 * 76.71985 * 11 9 7 21 21 H 1.09000 * 109.23330 * 317.02484 * 11 9 7 22 22 H 1.09006 * 109.20577 * 200.72843 * 12 11 9 23 23 H 1.08999 * 109.16952 * 81.39792 * 12 11 9 24 24 H 1.09002 * 110.24892 * 338.71336 * 13 12 11 25 25 H 1.08997 * 110.37092 * 216.71962 * 13 12 11 26 26 H 1.09001 * 108.52348 * 149.35211 * 14 13 12 27 27 H 1.09002 * 108.40195 * 31.74735 * 14 13 12 28 28 H 1.09003 * 109.84429 * 298.90321 * 15 14 13 29 29 H 1.08998 * 109.85271 * 177.91551 * 15 14 13 30 30 H 1.08005 * 119.99732 * 359.44083 * 17 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8455 -0.6259 -0.8682 11 6 3.9859 -2.6535 -0.1703 12 6 5.4733 -2.7803 0.2408 13 6 6.2560 -1.5820 -0.2121 14 6 6.3385 -0.6676 1.0059 15 6 5.2323 0.2820 1.1210 16 7 3.9589 -0.5118 1.1797 17 6 3.2510 -0.5867 2.3241 18 8 3.6409 -0.0101 3.3173 19 1 -0.4850 0.8400 -0.0004 20 1 3.8722 -2.9526 -1.2122 21 1 3.3798 -3.3039 0.4604 22 1 5.8956 -3.6770 -0.2128 23 1 5.5390 -2.8624 1.3258 24 1 5.7367 -1.0783 -1.0274 25 1 7.2556 -1.8793 -0.5290 26 1 7.2721 -0.1072 0.9556 27 1 6.3565 -1.2885 1.9016 28 1 5.2181 0.9405 0.2524 29 1 5.3435 0.8711 2.0312 30 1 2.3339 -1.1564 2.3555 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259904030.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = -25.044655 kcal Electronic energy + Delta-G solvation = -13534.194239 eV Core-core repulsion = 11329.925731 eV Total energy + Delta-G solvation = -2204.268508 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.42276 -36.67352 -33.87925 -32.45326 -31.58330 -26.94407 -25.75736 -22.81362 -22.40168 -19.90130 -18.49709 -17.15071 -15.89129 -15.64359 -14.75312 -14.23672 -13.81352 -13.66452 -13.32788 -12.70297 -12.48134 -12.14606 -11.83985 -11.37727 -10.96230 -10.62221 -10.46887 -10.18925 -10.04467 -9.80610 -9.61509 -9.39238 -8.91345 -8.54145 -7.50797 -6.27572 -4.34671 3.23585 3.37558 3.42045 3.80681 4.10081 4.33938 5.07994 5.17313 5.31728 5.41014 5.78004 5.82487 5.94336 6.07232 6.09727 6.23370 6.31621 6.42577 6.51055 6.57993 6.64630 6.72769 6.81002 6.99819 7.39355 7.66171 8.17901 8.62163 8.78416 9.22925 9.34590 10.81745 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036151 B = 0.017783 C = 0.015764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.332707 B = 1574.162188 C = 1775.772048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.083 3.917 3 Si 0.841 3.159 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.215 1.215 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.227 3.773 10 H 0.034 0.966 11 C -0.112 4.112 12 C -0.121 4.121 13 C -0.118 4.118 14 C -0.132 4.132 15 C 0.106 3.894 16 N -0.594 5.594 17 C 0.507 3.493 18 O -0.600 6.600 19 H 0.267 0.733 20 H 0.062 0.938 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.352 -2.104 -1.338 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.123 4.123 3 Si 0.667 3.333 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.138 1.138 7 C -0.583 4.583 8 H 0.099 0.901 9 C 0.125 3.875 10 H 0.052 0.948 11 C -0.151 4.151 12 C -0.159 4.159 13 C -0.155 4.155 14 C -0.170 4.170 15 C -0.015 4.015 16 N -0.328 5.328 17 C 0.279 3.721 18 O -0.481 6.481 19 H 0.077 0.923 20 H 0.081 0.919 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.368 -1.709 -0.823 10.540 hybrid contribution 0.111 0.889 -0.264 0.933 sum 10.479 -0.821 -1.086 10.567 Atomic orbital electron populations 1.69905 1.06574 1.27642 1.47554 1.25077 0.94680 0.99518 0.93022 0.87634 0.83656 0.83148 0.78818 1.20844 1.21840 1.13774 1.21316 0.88595 0.94921 1.53473 0.90059 1.18673 0.95084 0.89656 0.84090 0.94796 1.22447 0.93473 0.98417 1.00770 1.21620 0.96683 0.96991 1.00595 1.21055 0.99409 0.97055 0.98000 1.20827 0.98355 0.98980 0.98861 1.20849 0.84319 0.94048 1.02319 1.49474 1.22684 1.47550 1.13139 1.22615 0.87600 0.81084 0.80846 1.90528 1.72682 1.49321 1.35532 0.92273 0.91901 0.92274 0.93537 0.92536 0.91017 0.92496 0.92697 0.91998 0.91862 0.89943 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.96 55.43 0.77 -24.81 16 2 C 0.08 2.24 5.11 -17.82 -0.09 2.15 16 3 Si 0.84 20.22 25.71 -169.99 -4.37 15.85 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.22 -4.81 2.72 56.52 0.15 -4.66 16 7 C -0.55 -13.79 7.37 -34.44 -0.25 -14.04 16 8 H 0.08 2.22 7.87 -52.48 -0.41 1.81 16 9 C 0.23 4.77 1.17 -69.97 -0.08 4.69 16 10 H 0.03 0.73 6.07 -51.93 -0.32 0.41 16 11 C -0.11 -2.01 5.65 -25.02 -0.14 -2.15 16 12 C -0.12 -1.85 5.65 -27.19 -0.15 -2.00 16 13 C -0.12 -1.69 5.76 -28.41 -0.16 -1.86 16 14 C -0.13 -2.01 5.20 -30.19 -0.16 -2.17 16 15 C 0.11 1.94 4.32 -5.20 -0.02 1.91 16 16 N -0.59 -12.41 0.92 -174.55 -0.16 -12.57 16 17 C 0.51 11.65 9.48 54.06 0.51 12.16 16 18 O -0.60 -15.03 16.65 5.55 0.09 -14.94 16 19 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 20 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 21 H 0.06 1.09 7.91 -51.93 -0.41 0.68 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.90 6.82 -51.93 -0.35 0.55 16 24 H 0.07 1.09 6.28 -51.93 -0.33 0.77 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.99 6.92 -51.93 -0.36 0.63 16 28 H 0.06 1.11 7.11 -51.93 -0.37 0.74 16 29 H 0.08 1.58 7.13 -51.93 -0.37 1.21 16 30 H 0.13 3.10 6.91 -52.48 -0.36 2.74 16 LS Contribution 227.77 15.07 3.43 3.43 Total: -1.00 -29.17 227.77 -5.14 -34.31 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -4.35 Total: 0.03 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -0.55 Total: -1.31 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.61 Total: -37.38 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.09 Total: -14.94 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.37 Total: 15.85 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.17 -5.14 -34.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904030.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.267 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds