Wall clock time and date at job start Mon Mar 30 2020 02:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48498 * 109.47363 * 269.99746 * 3 2 1 5 5 H 1.48498 * 109.47069 * 30.00049 * 3 2 1 6 6 H 1.48504 * 109.46955 * 149.99769 * 3 2 1 7 7 C 1.37880 * 120.00470 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99226 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00413 * 179.97438 * 7 2 1 10 10 H 1.08994 * 107.85831 * 303.24329 * 9 7 2 11 11 C 1.54408 * 107.89081 * 186.68537 * 9 7 2 12 12 C 1.54840 * 110.06913 * 196.93516 * 11 9 7 13 13 C 1.50125 * 110.81895 * 321.07623 * 12 11 9 14 14 C 1.52520 * 105.41427 * 97.68427 * 13 12 11 15 15 C 1.46242 * 114.28036 * 270.59552 * 14 13 12 16 16 N 1.43435 * 108.15460 * 60.00430 * 9 7 2 17 17 C 1.34777 * 120.54029 * 33.30827 * 16 9 7 18 18 O 1.21283 * 120.00463 * 179.72102 * 17 16 9 19 19 H 0.96997 * 120.00124 * 0.02562 * 1 2 3 20 20 H 1.08995 * 109.43726 * 76.71985 * 11 9 7 21 21 H 1.09000 * 109.23330 * 317.02484 * 11 9 7 22 22 H 1.09006 * 109.20577 * 200.72843 * 12 11 9 23 23 H 1.08999 * 109.16952 * 81.39792 * 12 11 9 24 24 H 1.09002 * 110.24892 * 338.71336 * 13 12 11 25 25 H 1.08997 * 110.37092 * 216.71962 * 13 12 11 26 26 H 1.09001 * 108.52348 * 149.35211 * 14 13 12 27 27 H 1.09002 * 108.40195 * 31.74735 * 14 13 12 28 28 H 1.09003 * 109.84429 * 298.90321 * 15 14 13 29 29 H 1.08998 * 109.85271 * 177.91551 * 15 14 13 30 30 H 1.08005 * 119.99732 * 359.44083 * 17 16 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8455 -0.6259 -0.8682 11 6 3.9859 -2.6535 -0.1703 12 6 5.4733 -2.7803 0.2408 13 6 6.2560 -1.5820 -0.2121 14 6 6.3385 -0.6676 1.0059 15 6 5.2323 0.2820 1.1210 16 7 3.9589 -0.5118 1.1797 17 6 3.2510 -0.5867 2.3241 18 8 3.6409 -0.0101 3.3173 19 1 -0.4850 0.8400 -0.0004 20 1 3.8722 -2.9526 -1.2122 21 1 3.3798 -3.3039 0.4604 22 1 5.8956 -3.6770 -0.2128 23 1 5.5390 -2.8624 1.3258 24 1 5.7367 -1.0783 -1.0274 25 1 7.2556 -1.8793 -0.5290 26 1 7.2721 -0.1072 0.9556 27 1 6.3565 -1.2885 1.9016 28 1 5.2181 0.9405 0.2524 29 1 5.3435 0.8711 2.0312 30 1 2.3339 -1.1564 2.3555 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259904030.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:28 Heat of formation + Delta-G solvation = -43.278660 kcal Electronic energy + Delta-G solvation = -13534.984925 eV Core-core repulsion = 11329.925731 eV Total energy + Delta-G solvation = -2205.059194 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.07253 -38.35642 -35.59265 -34.08088 -33.32324 -28.66675 -27.30187 -24.54186 -23.95019 -21.23907 -20.18349 -19.11447 -17.61499 -17.33442 -16.42997 -15.86746 -15.36116 -15.14945 -14.95046 -14.59919 -14.15050 -13.73496 -13.25647 -12.97669 -12.78612 -12.30598 -11.96945 -11.69213 -11.46109 -11.37771 -11.21250 -11.06527 -10.85927 -10.45793 -9.24544 -8.37993 -6.46465 1.29093 1.40331 1.46964 1.95204 2.31716 2.41121 3.10035 3.85901 4.13807 4.17493 4.32121 4.43089 4.54948 4.58399 4.67083 4.82193 4.93610 5.05380 5.21530 5.27661 5.37484 5.42319 5.52540 5.53788 5.60808 5.89738 6.15331 6.65151 6.83498 7.23675 7.42814 8.74475 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.036151 B = 0.017783 C = 0.015764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.332707 B = 1574.162188 C = 1775.772048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.034 3.966 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.313 1.313 6 H -0.190 1.190 7 C -0.536 4.536 8 H 0.050 0.950 9 C 0.232 3.768 10 H 0.044 0.956 11 C -0.110 4.110 12 C -0.115 4.115 13 C -0.115 4.115 14 C -0.130 4.130 15 C 0.102 3.898 16 N -0.590 5.590 17 C 0.507 3.493 18 O -0.621 6.621 19 H 0.265 0.735 20 H 0.073 0.927 21 H 0.045 0.955 22 H 0.071 0.929 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.053 0.947 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.300 -2.072 -2.142 13.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.167 4.167 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.241 1.241 6 H -0.111 1.111 7 C -0.574 4.574 8 H 0.068 0.932 9 C 0.130 3.870 10 H 0.062 0.938 11 C -0.149 4.149 12 C -0.152 4.152 13 C -0.152 4.152 14 C -0.168 4.168 15 C -0.019 4.019 16 N -0.323 5.323 17 C 0.278 3.722 18 O -0.504 6.504 19 H 0.074 0.926 20 H 0.091 0.909 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.358 -1.696 -1.656 13.567 hybrid contribution -0.822 0.803 -0.027 1.150 sum 12.536 -0.893 -1.683 12.680 Atomic orbital electron populations 1.70032 1.08267 1.28087 1.50504 1.25764 0.95083 1.02572 0.93245 0.86921 0.83304 0.79187 0.79127 1.19901 1.24082 1.11145 1.21594 0.91131 0.93325 1.51373 0.93182 1.18665 0.92179 0.92047 0.84137 0.93827 1.22383 0.95631 0.95569 1.01284 1.21571 0.94487 0.98908 1.00244 1.21079 1.00912 0.96015 0.97176 1.20770 0.98282 0.98688 0.99034 1.21119 0.83588 0.94687 1.02483 1.49346 1.23601 1.47326 1.12069 1.22400 0.87508 0.80981 0.81274 1.90515 1.73218 1.50348 1.36335 0.92607 0.90856 0.93651 0.91041 0.93408 0.91520 0.89321 0.89510 0.92861 0.90489 0.90832 0.86395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 2 C 0.03 1.87 5.11 84.66 0.43 2.31 16 3 Si 0.89 41.42 25.71 68.60 1.76 43.18 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 5 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 6 H -0.19 -7.95 2.72 99.48 0.27 -7.68 16 7 C -0.54 -27.30 7.37 25.60 0.19 -27.11 16 8 H 0.05 2.82 7.87 -2.91 -0.02 2.80 16 9 C 0.23 9.34 1.17 45.29 0.05 9.40 16 10 H 0.04 1.73 6.07 -2.39 -0.01 1.71 16 11 C -0.11 -3.70 5.65 31.70 0.18 -3.52 16 12 C -0.11 -3.06 5.65 30.30 0.17 -2.89 16 13 C -0.11 -2.73 5.76 29.51 0.17 -2.56 16 14 C -0.13 -3.38 5.20 28.35 0.15 -3.24 16 15 C 0.10 3.36 4.32 83.58 0.36 3.72 16 16 N -0.59 -23.56 0.92 -824.55 -0.76 -24.32 16 17 C 0.51 23.10 9.48 129.79 1.23 24.33 16 18 O -0.62 -30.76 16.65 -3.04 -0.05 -30.81 16 19 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 20 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 21 H 0.04 1.64 7.91 -2.39 -0.02 1.62 16 22 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 23 H 0.05 1.38 6.82 -2.39 -0.02 1.36 16 24 H 0.07 1.70 6.28 -2.39 -0.01 1.68 16 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.51 6.92 -2.39 -0.02 1.50 16 28 H 0.08 2.36 7.11 -2.39 -0.02 2.35 16 29 H 0.07 2.61 7.13 -2.39 -0.02 2.59 16 30 H 0.12 5.68 6.91 -2.91 -0.02 5.66 16 Total: -1.00 -62.99 227.77 4.87 -58.13 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.68 Total: 8.70 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 2.93 Total: 0.43 kcal Atomic # 7 Polarization: -79.18 SS G_CDS: -0.46 Total: -79.64 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.05 Total: -30.81 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.76 Total: 43.18 kcal Total: -62.99 4.87 -58.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259904030.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.848 kcal (2) G-P(sol) polarization free energy of solvation -62.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds