Wall clock time and date at job start Mon Mar 30 2020 01:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 N 1.33386 * 125.32440 * 59.69600 * 4 2 1 6 6 C 1.31421 * 109.82086 * 179.87919 * 5 4 2 7 7 O 1.35340 * 126.15332 * 180.11209 * 6 5 4 8 8 N 1.36349 * 107.68422 * 0.37683 * 6 5 4 9 9 C 1.37379 * 126.92491 * 179.76854 * 8 6 5 10 10 H 1.07994 * 120.00330 * 359.97438 * 9 8 6 11 11 C 1.38939 * 119.99707 * 179.97438 * 9 8 6 12 12 N 1.31336 * 119.99976 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 119.99812 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.46824 * 90.00709 * 13 11 9 15 15 H 1.48500 * 109.47015 * 210.00356 * 13 11 9 16 16 H 1.48501 * 109.47226 * 330.00653 * 13 11 9 17 17 N 1.30795 * 125.32483 * 239.99974 * 4 2 1 18 18 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 19 19 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 20 20 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 22 22 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 23 23 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 25 25 H 0.96707 * 114.00040 * 270.31203 * 7 6 5 26 26 H 0.96991 * 119.99977 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7716 -0.3518 -2.4885 6 6 2.3630 -1.1804 -3.3197 7 8 2.3198 -1.1219 -4.6711 8 7 3.0229 -2.1129 -2.5754 9 6 3.7680 -3.1672 -3.0451 10 1 3.8755 -3.3212 -4.1086 11 6 4.3833 -4.0355 -2.1519 12 7 4.2522 -3.8486 -0.8585 13 14 5.3958 -5.4695 -2.7905 14 1 6.8074 -5.0413 -2.9615 15 1 5.3329 -6.5911 -1.8193 16 1 4.8519 -5.9159 -4.0982 17 7 2.7874 -1.7783 -1.2318 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5139 0.8900 22 1 1.6768 1.9562 0.8900 23 1 3.1300 1.4424 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.5857 -1.6147 -5.0629 26 1 4.6814 -4.4549 -0.2349 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259905351.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:15 Heat of formation + Delta-G solvation = 9.947567 kcal Electronic energy + Delta-G solvation = -12506.481796 eV Core-core repulsion = 10200.190321 eV Total energy + Delta-G solvation = -2306.291475 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.29621 -38.17956 -36.58516 -35.28769 -32.65908 -30.69031 -27.92588 -27.29881 -23.88498 -22.89444 -20.42887 -20.11117 -18.89618 -17.24726 -16.59115 -15.96770 -15.62396 -15.04344 -14.83344 -13.87017 -13.80751 -13.74371 -13.04908 -13.04049 -12.84032 -12.34915 -12.12322 -12.09591 -11.78501 -11.55323 -11.54361 -10.39800 -10.32758 -9.83649 -8.62931 -6.50464 1.04787 1.36055 1.54287 1.59490 1.93956 2.23302 2.39112 2.91412 3.22314 4.02251 4.12980 4.38347 4.57007 4.64839 4.89675 4.95797 5.04032 5.06127 5.11933 5.44638 5.45713 5.71046 6.01276 6.09948 6.53490 6.67120 7.32400 7.82927 8.36728 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.044879 B = 0.011685 C = 0.009888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.756435 B = 2395.560864 C = 2831.078901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.008 3.992 3 C -0.125 4.125 4 C 0.139 3.861 5 N -0.563 5.563 6 C 0.258 3.742 7 O -0.443 6.443 8 N -0.178 5.178 9 C -0.350 4.350 10 H 0.136 0.864 11 C 0.002 3.998 12 N -0.807 5.807 13 Si 1.023 2.977 14 H -0.263 1.263 15 H -0.268 1.268 16 H -0.247 1.247 17 N -0.319 5.319 18 H 0.053 0.947 19 H 0.092 0.908 20 H 0.036 0.964 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.034 0.966 24 H 0.052 0.948 25 H 0.400 0.600 26 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 0.789 0.009 2.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.013 4.013 3 C -0.183 4.183 4 C -0.139 4.139 5 N -0.305 5.305 6 C -0.043 4.043 7 O -0.243 6.243 8 N 0.036 4.964 9 C -0.484 4.484 10 H 0.153 0.847 11 C -0.212 4.212 12 N -0.434 5.434 13 Si 0.840 3.160 14 H -0.188 1.188 15 H -0.192 1.192 16 H -0.170 1.170 17 N -0.161 5.161 18 H 0.072 0.928 19 H 0.111 0.889 20 H 0.056 0.944 21 H 0.097 0.903 22 H 0.112 0.888 23 H 0.053 0.947 24 H 0.071 0.929 25 H 0.256 0.744 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.194 1.039 0.566 2.493 hybrid contribution 0.182 -1.043 -0.773 1.311 sum -2.012 -0.004 -0.207 2.022 Atomic orbital electron populations 1.21654 0.92467 1.01165 1.02892 1.19394 0.96865 0.95278 0.89738 1.21662 0.99813 0.93978 1.02889 1.24463 1.00269 0.95390 0.93790 1.69989 1.29710 1.30041 1.00805 1.21235 1.04556 0.93301 0.85161 1.84736 1.54429 1.74657 1.10502 1.47181 1.28782 1.16582 1.03845 1.20706 1.29224 1.02960 0.95526 0.84687 1.26930 0.97538 1.01910 0.94841 1.70335 1.34859 1.35185 1.03057 0.84547 0.77516 0.74759 0.79139 1.18803 1.19200 1.16988 1.78798 1.24697 1.18282 0.94356 0.92804 0.88948 0.94435 0.90349 0.88827 0.94718 0.92896 0.74386 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 9.18 71.98 0.66 -3.37 15 2 C 0.01 0.33 3.39 -11.54 -0.04 0.29 15 3 C -0.13 -4.19 9.17 71.98 0.66 -3.53 15 4 C 0.14 7.16 6.63 138.56 0.92 8.08 15 5 N -0.56 -29.57 11.22 -304.55 -3.42 -32.98 15 6 C 0.26 13.77 9.12 179.57 1.64 15.40 15 7 O -0.44 -19.67 13.56 -86.30 -1.17 -20.84 15 8 N -0.18 -10.24 3.77 -305.26 -1.15 -11.39 15 9 C -0.35 -18.94 10.24 83.99 0.86 -18.08 15 10 H 0.14 6.60 7.83 -2.91 -0.02 6.58 15 11 C 0.00 0.11 5.50 84.93 0.47 0.57 15 12 N -0.81 -44.51 11.89 21.65 0.26 -44.26 15 13 Si 1.02 37.57 29.55 68.60 2.03 39.59 15 14 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 15 H -0.27 -9.44 7.11 99.48 0.71 -8.73 15 16 H -0.25 -8.37 7.11 99.48 0.71 -7.66 15 17 N -0.32 -18.67 10.60 -51.21 -0.54 -19.22 15 18 H 0.05 1.82 8.14 -2.39 -0.02 1.80 15 19 H 0.09 2.24 8.14 -2.39 -0.02 2.22 15 20 H 0.04 1.29 8.14 -2.38 -0.02 1.27 15 21 H 0.08 3.06 8.14 -2.39 -0.02 3.04 15 22 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.03 1.24 8.14 -2.39 -0.02 1.22 15 24 H 0.05 1.84 8.14 -2.39 -0.02 1.82 15 25 H 0.40 13.09 9.06 -74.05 -0.67 12.42 15 26 H 0.28 14.16 8.31 -92.71 -0.77 13.39 15 Total: -1.00 -70.44 237.32 1.69 -68.74 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.52 Total: 20.98 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.17 Total: -0.64 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -4.85 Total: -107.84 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -1.17 Total: -20.84 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.59 kcal Total: -70.44 1.69 -68.74 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259905351.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.691 kcal (2) G-P(sol) polarization free energy of solvation -70.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds