Wall clock time and date at job start Mon Mar 30 2020 02:08:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.29023 * 126.43213 * 2 1 4 4 N 1.28746 * 108.80475 * 180.02562 * 3 2 1 5 5 N 1.28837 * 109.39526 * 0.02562 * 4 3 2 6 6 C 1.31072 * 107.99737 * 359.97438 * 5 4 3 7 7 C 1.50698 * 126.66572 * 179.97438 * 6 5 4 8 8 H 1.08995 * 109.47322 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.46535 * 60.03006 * 7 6 5 10 10 H 1.07998 * 120.00162 * 304.56976 * 9 7 6 11 11 C 1.37879 * 119.99591 * 124.57602 * 9 7 6 12 12 N 1.31512 * 119.99718 * 183.61656 * 11 9 7 13 13 Si 1.86798 * 120.00258 * 3.61454 * 11 9 7 14 14 H 1.48500 * 109.47125 * 85.30843 * 13 11 9 15 15 H 1.48499 * 109.47208 * 205.31030 * 13 11 9 16 16 H 1.48500 * 109.46984 * 325.30730 * 13 11 9 17 17 C 1.52999 * 109.47081 * 300.03040 * 7 6 5 18 18 N 1.46901 * 109.46822 * 185.39971 * 17 7 6 19 19 H 1.08997 * 109.47462 * 89.97386 * 1 2 3 20 20 H 1.09001 * 109.46148 * 209.97564 * 1 2 3 21 21 H 1.08999 * 109.46707 * 329.96971 * 1 2 3 22 22 H 0.97000 * 120.00568 * 179.97438 * 12 11 9 23 23 H 1.08993 * 109.47438 * 305.40173 * 17 7 6 24 24 H 1.09005 * 109.46965 * 65.40546 * 17 7 6 25 25 H 1.00901 * 110.99971 * 179.29825 * 18 17 7 26 26 H 1.00898 * 111.00370 * 303.25294 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2313 1.0381 0.0000 4 7 3.4583 0.6482 -0.0005 5 7 3.4981 -0.6396 -0.0014 6 6 2.2646 -1.0828 -0.0009 7 6 1.8265 -2.5247 -0.0021 8 1 0.7376 -2.5736 -0.0018 9 6 2.3606 -3.2129 1.2276 10 1 3.4202 -3.2002 1.4363 11 6 1.4966 -3.8590 2.0861 12 7 1.9528 -4.3982 3.1954 13 14 -0.3220 -3.9682 1.6737 14 1 -0.5601 -5.1388 0.7915 15 1 -1.1050 -4.1246 2.9258 16 1 -0.7467 -2.7280 0.9760 17 6 2.3679 -3.2212 -1.2522 18 7 1.8355 -4.5886 -1.3202 19 1 -0.3634 0.0005 -1.0276 20 1 -0.3632 -0.8903 0.5135 21 1 -0.3633 0.8897 0.5143 22 1 1.3450 -4.8524 3.7997 23 1 2.0604 -2.6670 -2.1389 24 1 3.4564 -3.2570 -1.2055 25 1 2.1696 -5.0662 -2.1439 26 1 2.0622 -5.1069 -0.4848 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935660.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:25 Heat of formation + Delta-G solvation = 86.115783 kcal Electronic energy + Delta-G solvation = -12752.496676 eV Core-core repulsion = 10481.800854 eV Total energy + Delta-G solvation = -2270.695822 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.01128 -37.58047 -36.41882 -34.30817 -33.51587 -30.58314 -29.08770 -26.40661 -24.70445 -23.62100 -21.55911 -19.27391 -18.36768 -18.01436 -16.97689 -16.38982 -15.90692 -14.98341 -14.60428 -14.55895 -14.38769 -14.00312 -13.35127 -13.18089 -13.09448 -12.61204 -12.21342 -12.04209 -11.78333 -11.65101 -11.39185 -10.78449 -10.67329 -9.47053 -8.33120 -6.46268 0.37406 1.24092 1.34450 1.36534 1.52020 1.54852 2.34467 2.93504 3.39086 3.47600 3.90032 4.17394 4.23960 4.45549 4.48721 4.57039 4.66513 4.76116 4.90649 5.14420 5.37828 5.47102 6.20214 6.33945 6.64046 6.82544 7.21108 7.71695 8.81812 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.034062 B = 0.015121 C = 0.014059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.835154 B = 1851.344038 C = 1991.089288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.312 5.312 3 N -0.118 5.118 4 N -0.117 5.117 5 N -0.343 5.343 6 C 0.221 3.779 7 C 0.089 3.911 8 H 0.089 0.911 9 C -0.513 4.513 10 H 0.028 0.972 11 C 0.028 3.972 12 N -0.935 5.935 13 Si 0.944 3.056 14 H -0.248 1.248 15 H -0.297 1.297 16 H -0.227 1.227 17 C 0.088 3.912 18 N -0.843 5.843 19 H 0.128 0.872 20 H 0.107 0.893 21 H 0.127 0.873 22 H 0.271 0.729 23 H 0.068 0.932 24 H 0.012 0.988 25 H 0.348 0.652 26 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.361 3.039 -8.477 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.114 5.114 3 N -0.104 5.104 4 N -0.111 5.111 5 N -0.192 5.192 6 C -0.057 4.057 7 C 0.066 3.934 8 H 0.107 0.893 9 C -0.551 4.551 10 H 0.047 0.953 11 C -0.173 4.173 12 N -0.572 5.572 13 Si 0.767 3.233 14 H -0.172 1.172 15 H -0.224 1.224 16 H -0.151 1.151 17 C -0.044 4.044 18 N -0.374 5.374 19 H 0.146 0.854 20 H 0.125 0.875 21 H 0.146 0.854 22 H 0.080 0.920 23 H 0.086 0.914 24 H 0.031 0.969 25 H 0.161 0.839 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.132 4.336 -8.360 13.118 hybrid contribution 0.109 -1.005 0.638 1.196 sum -9.022 3.331 -7.722 12.334 Atomic orbital electron populations 1.22976 0.69305 1.07810 1.07853 1.48738 1.11927 1.03416 1.47313 1.78542 0.97968 1.13774 1.20157 1.78412 1.10971 1.04900 1.16856 1.74870 1.20178 1.02852 1.21308 1.27310 0.85999 0.95610 0.96831 1.18107 0.98837 0.80390 0.96052 0.89300 1.20717 0.94237 1.33587 1.06584 0.95342 1.26045 1.04232 0.93681 0.93318 1.70055 1.38225 1.36991 1.11971 0.85851 0.77999 0.81757 0.77649 1.17184 1.22446 1.15088 1.21538 0.96044 0.90991 0.95851 1.58689 1.66520 1.03547 1.08597 0.85407 0.87513 0.85434 0.92015 0.91401 0.96916 0.83911 0.84104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.34 11.12 127.77 1.42 2.76 15 2 N -0.31 -11.20 3.75 -359.63 -1.35 -12.54 15 3 N -0.12 -4.69 13.29 37.02 0.49 -4.19 15 4 N -0.12 -5.36 13.43 37.01 0.50 -4.86 15 5 N -0.34 -16.45 12.36 -50.45 -0.62 -17.07 15 6 C 0.22 9.43 6.62 138.13 0.91 10.34 15 7 C 0.09 3.69 2.27 -12.29 -0.03 3.66 15 8 H 0.09 3.34 3.32 -2.39 -0.01 3.33 15 9 C -0.51 -26.74 7.90 25.60 0.20 -26.54 15 10 H 0.03 1.77 8.06 -2.91 -0.02 1.74 15 11 C 0.03 1.43 5.47 84.66 0.46 1.89 15 12 N -0.94 -54.01 13.96 21.45 0.30 -53.71 15 13 Si 0.94 37.36 27.37 68.60 1.88 39.24 15 14 H -0.25 -9.42 7.11 99.48 0.71 -8.71 15 15 H -0.30 -12.13 7.11 99.48 0.71 -11.42 15 16 H -0.23 -7.28 4.59 99.48 0.46 -6.82 15 17 C 0.09 3.27 6.21 86.30 0.54 3.80 15 18 N -0.84 -28.04 9.62 -186.72 -1.80 -29.84 15 19 H 0.13 1.97 8.14 -2.39 -0.02 1.95 15 20 H 0.11 2.44 5.54 -2.39 -0.01 2.43 15 21 H 0.13 2.16 8.14 -2.39 -0.02 2.14 15 22 H 0.27 14.59 8.31 -92.71 -0.77 13.82 15 23 H 0.07 2.19 8.14 -2.39 -0.02 2.17 15 24 H 0.01 0.51 8.14 -2.38 -0.02 0.49 15 25 H 0.35 9.24 9.08 -89.69 -0.81 8.42 15 26 H 0.35 13.05 8.11 -89.70 -0.73 12.32 15 Total: -1.00 -67.54 227.15 2.34 -65.20 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: -0.56 Total: 21.87 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: 3.51 Total: -4.08 kcal Atomic # 7 Polarization: -119.74 SS G_CDS: -2.48 Total: -122.22 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 1.88 Total: 39.24 kcal Total: -67.54 2.34 -65.20 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935660.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.312 kcal (2) G-P(sol) polarization free energy of solvation -67.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds