Wall clock time and date at job start Mon Mar 30 2020 02:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29016 * 126.43886 * 2 1 4 4 N 1.28744 * 108.81036 * 180.02562 * 3 2 1 5 5 N 1.28838 * 109.39170 * 359.76674 * 4 3 2 6 6 C 1.31071 * 107.99426 * 0.37983 * 5 4 3 7 7 C 1.50701 * 126.65992 * 179.89113 * 6 5 4 8 8 H 1.09002 * 109.47060 * 179.68749 * 7 6 5 9 9 C 1.50699 * 109.47269 * 299.68602 * 7 6 5 10 10 H 1.08000 * 119.99792 * 0.02562 * 9 7 6 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 7 6 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47319 * 60.00570 * 13 11 9 15 15 H 1.48503 * 109.46734 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47266 * 300.00384 * 13 11 9 17 17 C 1.52997 * 109.47212 * 59.68693 * 7 6 5 18 18 N 1.46905 * 109.47150 * 64.99640 * 17 7 6 19 19 H 1.08994 * 109.47291 * 269.97110 * 1 2 3 20 20 H 1.09003 * 109.46878 * 29.97045 * 1 2 3 21 21 H 1.09006 * 109.47275 * 149.96920 * 1 2 3 22 22 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 23 23 H 1.09001 * 109.47630 * 184.99895 * 17 7 6 24 24 H 1.09004 * 109.47346 * 305.00026 * 17 7 6 25 25 H 1.00898 * 110.99834 * 180.02562 * 18 17 7 26 26 H 1.00895 * 111.00168 * 303.95574 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0379 0.0000 4 7 3.4583 0.6480 -0.0005 5 7 3.4979 -0.6397 0.0040 6 6 2.2644 -1.0828 -0.0007 7 6 1.8263 -2.5247 -0.0002 8 1 0.7374 -2.5736 0.0007 9 6 2.3589 -3.2120 -1.2311 10 1 2.9554 -2.6599 -1.9423 11 6 2.0855 -4.5458 -1.4487 12 7 1.3596 -5.2181 -0.5824 13 14 2.7464 -5.3978 -2.9741 14 1 4.2298 -5.3309 -2.9750 15 1 2.3145 -6.8186 -2.9737 16 1 2.2196 -4.7211 -4.1865 17 6 2.3691 -3.2224 1.2485 18 7 1.7573 -2.6299 2.4455 19 1 -0.3633 -0.0005 1.0276 20 1 -0.3633 0.8903 -0.5134 21 1 -0.3634 -0.8897 -0.5143 22 1 1.1670 -6.1563 -0.7356 23 1 2.1281 -4.2845 1.2052 24 1 3.4510 -3.0969 1.2936 25 1 2.1002 -3.0736 3.2842 26 1 1.9119 -1.6333 2.4750 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259935661.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:27 Heat of formation + Delta-G solvation = 109.200787 kcal Electronic energy + Delta-G solvation = -12708.520457 eV Core-core repulsion = 10438.825676 eV Total energy + Delta-G solvation = -2269.694781 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.35934 -35.77480 -34.83766 -32.41521 -31.63356 -28.68437 -27.57361 -24.23701 -23.10185 -22.13690 -19.96318 -16.96956 -16.77244 -16.16636 -15.13942 -14.69522 -14.03755 -13.60367 -13.29301 -13.25433 -12.19010 -12.09538 -11.59287 -11.21731 -11.01575 -10.76168 -10.67769 -10.39843 -10.17147 -10.04666 -9.72966 -8.91193 -8.67363 -7.87921 -6.25825 -4.34739 2.02381 2.72984 3.07606 3.23260 3.27588 3.33154 4.26971 4.86053 5.02618 5.16146 5.28394 5.48262 5.55613 5.60197 6.22704 6.47251 6.53555 6.60535 6.94688 7.19772 7.45599 7.64740 7.88657 8.05789 8.11552 8.67849 9.31479 9.41258 10.79567 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.038732 B = 0.012783 C = 0.011531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.751267 B = 2189.938989 C = 2427.599057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.323 5.323 3 N -0.131 5.131 4 N -0.095 5.095 5 N -0.316 5.316 6 C 0.235 3.765 7 C 0.128 3.872 8 H 0.060 0.940 9 C -0.516 4.516 10 H 0.064 0.936 11 C 0.069 3.931 12 N -0.883 5.883 13 Si 0.903 3.097 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.276 1.276 17 C 0.067 3.933 18 N -0.853 5.853 19 H 0.091 0.909 20 H 0.095 0.905 21 H 0.108 0.892 22 H 0.267 0.733 23 H 0.119 0.881 24 H 0.016 0.984 25 H 0.328 0.672 26 H 0.314 0.686 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.896 3.939 2.205 5.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.123 5.123 3 N -0.117 5.117 4 N -0.090 5.090 5 N -0.165 5.165 6 C -0.042 4.042 7 C 0.106 3.894 8 H 0.077 0.923 9 C -0.555 4.555 10 H 0.082 0.918 11 C -0.135 4.135 12 N -0.520 5.520 13 Si 0.730 3.270 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.201 1.201 17 C -0.064 4.064 18 N -0.380 5.380 19 H 0.109 0.891 20 H 0.113 0.887 21 H 0.126 0.874 22 H 0.077 0.923 23 H 0.137 0.863 24 H 0.034 0.966 25 H 0.139 0.861 26 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.682 4.527 1.927 6.145 hybrid contribution 0.468 -0.722 -0.556 1.024 sum -3.214 3.805 1.371 5.166 Atomic orbital electron populations 1.22232 0.72464 1.05897 1.05001 1.48367 1.10302 1.04710 1.48955 1.78647 0.98271 1.13575 1.21219 1.78447 1.09946 1.05195 1.15378 1.75003 1.18609 1.02171 1.20725 1.27367 0.85656 0.95417 0.95711 1.17716 0.97884 0.78000 0.95790 0.92254 1.20831 1.34270 0.95373 1.05048 0.91822 1.24926 0.94520 0.96972 0.97060 1.69841 1.37194 1.09855 1.35130 0.86452 0.79704 0.78248 0.82551 1.19837 1.20979 1.20105 1.22132 0.94526 1.02815 0.86897 1.59070 1.66378 1.06827 1.05707 0.89065 0.88671 0.87378 0.92262 0.86310 0.96606 0.86110 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 11.12 59.85 0.67 1.80 15 2 N -0.32 -6.11 3.75 -65.03 -0.24 -6.35 15 3 N -0.13 -2.67 13.29 60.35 0.80 -1.87 15 4 N -0.10 -2.16 13.43 60.35 0.81 -1.35 15 5 N -0.32 -7.52 12.36 32.70 0.40 -7.11 15 6 C 0.24 5.18 5.61 -155.43 -0.87 4.31 15 7 C 0.13 2.98 2.32 -92.92 -0.22 2.76 15 8 H 0.06 1.39 6.85 -51.93 -0.36 1.04 15 9 C -0.52 -13.37 8.55 -34.44 -0.29 -13.67 15 10 H 0.06 1.72 7.74 -52.49 -0.41 1.32 15 11 C 0.07 1.75 5.29 -17.82 -0.09 1.66 15 12 N -0.88 -22.89 11.29 55.43 0.63 -22.27 15 13 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 15 14 H -0.27 -6.20 7.11 56.52 0.40 -5.79 15 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 15 16 H -0.28 -6.16 7.11 56.52 0.40 -5.75 15 17 C 0.07 1.51 6.07 -3.82 -0.02 1.49 15 18 N -0.85 -16.10 9.62 -10.37 -0.10 -16.20 15 19 H 0.09 1.02 8.14 -51.93 -0.42 0.59 15 20 H 0.09 1.00 8.14 -51.93 -0.42 0.58 15 21 H 0.11 1.41 7.13 -51.93 -0.37 1.04 15 22 H 0.27 6.65 8.31 -40.82 -0.34 6.31 15 23 H 0.12 2.93 5.95 -51.93 -0.31 2.63 15 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 25 H 0.33 5.45 9.08 -39.29 -0.36 5.10 15 26 H 0.31 5.83 8.07 -39.29 -0.32 5.51 15 LS Contribution 231.11 15.07 3.48 3.48 Total: -1.00 -28.85 231.11 -2.59 -31.44 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -2.52 Total: 6.65 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -0.83 Total: -1.65 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 2.30 Total: -55.16 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.85 -2.59 -31.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935661.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.645 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds