Wall clock time and date at job start Mon Mar 30 2020 02:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29016 * 126.43886 * 2 1 4 4 N 1.28744 * 108.81036 * 180.02562 * 3 2 1 5 5 N 1.28838 * 109.39170 * 359.76674 * 4 3 2 6 6 C 1.31071 * 107.99426 * 0.37983 * 5 4 3 7 7 C 1.50701 * 126.65992 * 179.89113 * 6 5 4 8 8 H 1.09002 * 109.47060 * 179.68749 * 7 6 5 9 9 C 1.50699 * 109.47269 * 299.68602 * 7 6 5 10 10 H 1.08000 * 119.99792 * 0.02562 * 9 7 6 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 7 6 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47319 * 60.00570 * 13 11 9 15 15 H 1.48503 * 109.46734 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47266 * 300.00384 * 13 11 9 17 17 C 1.52997 * 109.47212 * 59.68693 * 7 6 5 18 18 N 1.46905 * 109.47150 * 64.99640 * 17 7 6 19 19 H 1.08994 * 109.47291 * 269.97110 * 1 2 3 20 20 H 1.09003 * 109.46878 * 29.97045 * 1 2 3 21 21 H 1.09006 * 109.47275 * 149.96920 * 1 2 3 22 22 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 23 23 H 1.09001 * 109.47630 * 184.99895 * 17 7 6 24 24 H 1.09004 * 109.47346 * 305.00026 * 17 7 6 25 25 H 1.00898 * 110.99834 * 180.02562 * 18 17 7 26 26 H 1.00895 * 111.00168 * 303.95574 * 18 17 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2313 1.0379 0.0000 4 7 3.4583 0.6480 -0.0005 5 7 3.4979 -0.6397 0.0040 6 6 2.2644 -1.0828 -0.0007 7 6 1.8263 -2.5247 -0.0002 8 1 0.7374 -2.5736 0.0007 9 6 2.3589 -3.2120 -1.2311 10 1 2.9554 -2.6599 -1.9423 11 6 2.0855 -4.5458 -1.4487 12 7 1.3596 -5.2181 -0.5824 13 14 2.7464 -5.3978 -2.9741 14 1 4.2298 -5.3309 -2.9750 15 1 2.3145 -6.8186 -2.9737 16 1 2.2196 -4.7211 -4.1865 17 6 2.3691 -3.2224 1.2485 18 7 1.7573 -2.6299 2.4455 19 1 -0.3633 -0.0005 1.0276 20 1 -0.3633 0.8903 -0.5134 21 1 -0.3634 -0.8897 -0.5143 22 1 1.1670 -6.1563 -0.7356 23 1 2.1281 -4.2845 1.2052 24 1 3.4510 -3.0969 1.2936 25 1 2.1002 -3.0736 3.2842 26 1 1.9119 -1.6333 2.4750 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259935661.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:27 Heat of formation + Delta-G solvation = 86.701818 kcal Electronic energy + Delta-G solvation = -12709.496085 eV Core-core repulsion = 10438.825676 eV Total energy + Delta-G solvation = -2270.670410 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -45.01500 -37.54312 -36.38578 -34.28593 -33.30955 -30.37832 -28.98861 -26.13661 -24.80218 -23.72607 -21.71575 -18.77568 -18.28515 -17.86913 -16.95898 -16.35414 -15.74982 -15.34396 -14.71639 -14.47545 -13.98131 -13.68681 -13.14615 -13.01639 -12.83292 -12.54297 -12.45891 -12.14748 -11.84405 -11.67005 -11.60016 -10.66133 -10.60261 -9.52494 -8.20784 -6.35609 0.39283 1.29745 1.34433 1.44518 1.47330 1.54909 2.41236 3.06375 3.45886 3.51944 3.90610 4.11319 4.30968 4.51972 4.62242 4.74125 4.78688 4.92066 5.30533 5.43972 5.59962 5.72402 6.05507 6.31889 6.57715 6.70787 7.33034 7.72987 8.83411 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.038732 B = 0.012783 C = 0.011531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.751267 B = 2189.938989 C = 2427.599057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.307 5.307 3 N -0.117 5.117 4 N -0.118 5.118 5 N -0.343 5.343 6 C 0.225 3.775 7 C 0.135 3.865 8 H 0.058 0.942 9 C -0.536 4.536 10 H 0.044 0.956 11 C 0.035 3.965 12 N -0.897 5.897 13 Si 0.954 3.046 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.273 1.273 17 C 0.080 3.920 18 N -0.842 5.842 19 H 0.118 0.882 20 H 0.127 0.873 21 H 0.110 0.890 22 H 0.270 0.730 23 H 0.098 0.902 24 H -0.003 1.003 25 H 0.343 0.657 26 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.917 4.230 2.260 6.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.108 5.108 3 N -0.104 5.104 4 N -0.112 5.112 5 N -0.192 5.192 6 C -0.053 4.053 7 C 0.113 3.887 8 H 0.076 0.924 9 C -0.576 4.576 10 H 0.062 0.938 11 C -0.167 4.167 12 N -0.534 5.534 13 Si 0.780 3.220 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.198 1.198 17 C -0.052 4.052 18 N -0.370 5.370 19 H 0.136 0.864 20 H 0.145 0.855 21 H 0.128 0.872 22 H 0.080 0.920 23 H 0.116 0.884 24 H 0.016 0.984 25 H 0.156 0.844 26 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.730 4.825 1.997 7.046 hybrid contribution 0.706 -0.760 -0.544 1.171 sum -4.024 4.065 1.453 5.902 Atomic orbital electron populations 1.22794 0.69110 1.07635 1.07357 1.48704 1.11994 1.03344 1.46804 1.78557 0.97952 1.13744 1.20116 1.78426 1.10966 1.04834 1.16958 1.74921 1.20014 1.02834 1.21459 1.26994 0.85811 0.95564 0.96907 1.17500 0.97466 0.78641 0.95088 0.92392 1.20956 1.34637 0.95984 1.06000 0.93776 1.25486 0.94640 0.97299 0.99231 1.69908 1.37456 1.10097 1.35989 0.85662 0.78672 0.77787 0.79892 1.20439 1.19917 1.19829 1.21796 0.93448 1.01699 0.88214 1.58941 1.65694 1.07154 1.05214 0.86371 0.85474 0.87200 0.92002 0.88394 0.98440 0.84425 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.64 11.12 127.77 1.42 3.06 15 2 N -0.31 -11.03 3.75 -359.64 -1.35 -12.38 15 3 N -0.12 -4.58 13.29 37.02 0.49 -4.09 15 4 N -0.12 -5.27 13.43 37.01 0.50 -4.77 15 5 N -0.34 -16.25 12.36 -50.45 -0.62 -16.87 15 6 C 0.22 9.73 5.61 138.14 0.77 10.51 15 7 C 0.14 6.23 2.32 -12.29 -0.03 6.20 15 8 H 0.06 2.67 6.85 -2.39 -0.02 2.66 15 9 C -0.54 -27.90 8.55 25.60 0.22 -27.68 15 10 H 0.04 2.42 7.74 -2.91 -0.02 2.40 15 11 C 0.04 1.80 5.29 84.65 0.45 2.24 15 12 N -0.90 -46.04 11.29 21.45 0.24 -45.80 15 13 Si 0.95 41.14 29.54 68.60 2.03 43.16 15 14 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 15 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 16 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 17 C 0.08 3.58 6.07 86.30 0.52 4.11 15 18 N -0.84 -30.58 9.62 -186.71 -1.80 -32.38 15 19 H 0.12 2.19 8.14 -2.39 -0.02 2.17 15 20 H 0.13 2.18 8.14 -2.39 -0.02 2.16 15 21 H 0.11 2.60 7.13 -2.38 -0.02 2.58 15 22 H 0.27 13.21 8.31 -92.71 -0.77 12.44 15 23 H 0.10 4.84 5.95 -2.39 -0.01 4.82 15 24 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 15 25 H 0.34 10.84 9.08 -89.70 -0.81 10.03 15 26 H 0.32 11.30 8.07 -89.70 -0.72 10.58 15 Total: -1.00 -60.51 231.11 2.53 -57.98 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -0.32 Total: 16.71 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 3.36 Total: -1.56 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -2.54 Total: -116.29 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -60.51 2.53 -57.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259935661.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.677 kcal (2) G-P(sol) polarization free energy of solvation -60.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds