Wall clock time and date at job start Mon Mar 30 2020 01:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34314 * 127.07566 * 2 1 4 4 N 1.21157 * 109.77646 * 180.02562 * 3 2 1 5 5 N 1.28642 * 111.52261 * 0.02562 * 4 3 2 6 6 C 1.34521 * 107.93295 * 359.97438 * 5 4 3 7 7 C 1.50695 * 127.53939 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46846 * 165.04099 * 7 6 5 9 9 N 1.46905 * 109.46883 * 45.04914 * 7 6 5 10 10 C 1.52992 * 109.47692 * 285.04759 * 7 6 5 11 11 C 1.50694 * 109.47469 * 184.99680 * 10 7 6 12 12 H 1.07997 * 120.00077 * 0.02562 * 11 10 7 13 13 C 1.37878 * 120.00298 * 179.97438 * 11 10 7 14 14 N 1.31520 * 119.99836 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00258 * 180.02562 * 13 11 10 16 16 H 1.48491 * 109.47191 * 60.00432 * 15 13 11 17 17 H 1.48502 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46762 * 300.00334 * 15 13 11 19 19 H 1.08995 * 109.47142 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.46589 * 119.98072 * 1 2 3 21 21 H 1.08992 * 109.46889 * 239.97442 * 1 2 3 22 22 H 1.00894 * 111.00200 * 299.99727 * 9 7 6 23 23 H 1.00895 * 111.00091 * 63.95346 * 9 7 6 24 24 H 1.09006 * 109.47102 * 305.00298 * 10 7 6 25 25 H 1.09000 * 109.47086 * 64.99792 * 10 7 6 26 26 H 0.97001 * 120.00033 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3168 1.0716 0.0000 4 7 3.4735 0.7113 -0.0005 5 7 3.5683 -0.5716 -0.0014 6 6 2.3224 -1.0789 -0.0009 7 6 1.9227 -2.5319 -0.0022 8 1 0.8692 -2.6191 0.2639 9 7 2.7371 -3.2646 0.9766 10 6 2.1472 -3.1215 -1.3959 11 6 1.6340 -4.5380 -1.4308 12 1 1.1915 -4.9739 -0.5474 13 6 1.7284 -5.2771 -2.5909 14 7 2.2669 -4.7461 -3.6669 15 14 1.0916 -7.0327 -2.6344 16 1 -0.3599 -7.0406 -2.3212 17 1 1.3097 -7.6050 -3.9872 18 1 1.8194 -7.8482 -1.6290 19 1 -0.3633 1.0276 0.0005 20 1 -0.3632 -0.5136 -0.8902 21 1 -0.3633 -0.5142 0.8897 22 1 3.7185 -3.1989 0.7519 23 1 2.5580 -2.9367 1.9138 24 1 1.6130 -2.5232 -2.1340 25 1 3.2127 -3.1154 -1.6256 26 1 2.3337 -5.2662 -4.4830 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259951660.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:27 Heat of formation + Delta-G solvation = 65.258281 kcal Electronic energy + Delta-G solvation = -12341.305222 eV Core-core repulsion = 10037.412200 eV Total energy + Delta-G solvation = -2303.893022 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.27222 -36.80246 -34.55814 -33.11872 -32.17101 -28.40740 -27.95917 -25.34297 -23.16111 -22.17081 -20.30124 -17.96775 -17.05481 -16.33481 -15.31236 -14.51866 -14.44294 -14.01843 -13.35470 -13.20995 -12.69337 -12.24007 -12.13374 -11.61789 -11.21161 -11.14178 -10.85385 -10.59969 -10.33956 -9.79616 -9.18137 -8.93248 -8.34330 -8.18620 -5.95486 -3.95747 1.17666 2.32914 2.85843 3.38084 3.42456 3.45707 4.47482 4.56768 4.69746 4.84471 5.28601 5.35829 5.41275 5.47384 5.67053 5.78634 5.93801 6.14070 6.58673 7.42042 7.64592 7.84470 8.02451 8.08589 8.43176 8.54947 9.09845 9.66671 11.16329 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.055286 B = 0.008889 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.336607 B = 3149.171815 C = 3181.342024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.061 4.061 3 O 0.077 5.923 4 N -0.167 5.167 5 N -0.251 5.251 6 C -0.040 4.040 7 C 0.179 3.821 8 H 0.094 0.906 9 N -0.812 5.812 10 C 0.036 3.964 11 C -0.498 4.498 12 H 0.064 0.936 13 C 0.052 3.948 14 N -0.901 5.901 15 Si 0.896 3.104 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.277 1.277 19 H 0.082 0.918 20 H 0.101 0.899 21 H 0.094 0.906 22 H 0.345 0.655 23 H 0.322 0.678 24 H 0.019 0.981 25 H 0.023 0.977 26 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 8.104 7.585 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.133 4.133 3 O 0.019 5.981 4 N -0.019 5.019 5 N -0.137 5.137 6 C -0.171 4.171 7 C 0.065 3.935 8 H 0.112 0.888 9 N -0.339 5.339 10 C -0.001 4.001 11 C -0.537 4.537 12 H 0.083 0.917 13 C -0.148 4.148 14 N -0.541 5.541 15 Si 0.724 3.276 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.202 1.202 19 H 0.101 0.899 20 H 0.119 0.881 21 H 0.112 0.888 22 H 0.159 0.841 23 H 0.133 0.867 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.490 7.878 7.150 11.197 hybrid contribution -0.674 -0.055 -0.020 0.676 sum -4.163 7.823 7.130 11.374 Atomic orbital electron populations 1.20396 0.82786 1.04492 1.05118 1.25304 0.97380 0.83915 1.06676 1.84946 1.13848 1.35923 1.63403 1.78636 0.97446 1.09107 1.16761 1.75609 1.23811 1.00027 1.14223 1.25051 0.87964 1.01914 1.02196 1.20480 0.97153 0.77887 0.97930 0.88833 1.58857 1.11853 1.59476 1.03674 1.19144 0.98092 0.95989 0.86898 1.21039 1.38738 0.97119 0.96785 0.91734 1.25027 0.95694 0.98342 0.95740 1.69969 1.45209 1.37144 1.01760 0.86595 0.79232 0.84910 0.76837 1.20356 1.21595 1.20216 0.89917 0.88071 0.88751 0.84110 0.86718 0.96257 0.95886 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 9.99 36.01 0.36 -0.35 15 2 C -0.06 -0.92 7.54 -35.38 -0.27 -1.19 15 3 O 0.08 1.23 11.33 16.38 0.19 1.42 15 4 N -0.17 -3.09 13.28 60.30 0.80 -2.29 15 5 N -0.25 -4.97 12.47 33.39 0.42 -4.55 15 6 C -0.04 -0.72 6.14 -82.49 -0.51 -1.23 15 7 C 0.18 3.50 3.12 -68.87 -0.21 3.28 15 8 H 0.09 1.67 7.75 -51.93 -0.40 1.27 15 9 N -0.81 -15.05 8.94 -5.66 -0.05 -15.10 15 10 C 0.04 0.91 4.60 -27.89 -0.13 0.78 15 11 C -0.50 -13.64 8.84 -34.44 -0.30 -13.94 15 12 H 0.06 1.73 7.74 -52.49 -0.41 1.32 15 13 C 0.05 1.48 5.46 -17.82 -0.10 1.38 15 14 N -0.90 -27.01 13.29 55.43 0.74 -26.27 15 15 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 15 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 19 H 0.08 0.63 8.14 -51.93 -0.42 0.21 15 20 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 21 H 0.09 0.79 8.14 -51.93 -0.42 0.37 15 22 H 0.35 6.62 8.96 -39.29 -0.35 6.26 15 23 H 0.32 4.96 9.06 -39.29 -0.36 4.60 15 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 25 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 15 LS Contribution 238.39 15.07 3.59 3.59 Total: -1.00 -31.48 238.39 -3.26 -34.75 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -2.77 Total: 3.13 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -1.16 Total: -11.26 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 1.90 Total: -48.21 kcal Atomic # 8 Polarization: 1.23 SS G_CDS: 0.19 Total: 1.42 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -31.48 -3.26 -34.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259951660.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.005 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds