Wall clock time and date at job start Mon Mar 30 2020 01:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31134 * 126.55126 * 2 1 4 4 C 1.34493 * 105.61795 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.29023 * 179.97438 * 4 3 2 6 6 H 1.09008 * 109.46977 * 15.00962 * 5 4 3 7 7 N 1.46904 * 109.46837 * 135.00219 * 5 4 3 8 8 C 1.52997 * 109.47721 * 255.00812 * 5 4 3 9 9 C 1.50701 * 109.47212 * 174.99887 * 8 5 4 10 10 H 1.07998 * 120.00129 * 0.02562 * 9 8 5 11 11 C 1.37880 * 119.99861 * 179.97438 * 9 8 5 12 12 N 1.31512 * 119.99594 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 119.99875 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.47061 * 90.00257 * 13 11 9 15 15 H 1.48497 * 109.46906 * 209.99430 * 13 11 9 16 16 H 1.48498 * 109.47403 * 329.99876 * 13 11 9 17 17 N 1.29950 * 107.42436 * 0.24879 * 4 3 2 18 18 O 1.21305 * 110.24585 * 359.56891 * 17 4 3 19 19 H 1.08997 * 109.46649 * 90.00155 * 1 2 3 20 20 H 1.08999 * 109.46736 * 209.99728 * 1 2 3 21 21 H 1.08996 * 109.46844 * 329.99905 * 1 2 3 22 22 H 1.00898 * 110.99372 * 60.01160 * 7 5 4 23 23 H 1.00904 * 110.99944 * 183.95594 * 7 5 4 24 24 H 1.09002 * 109.47153 * 54.99889 * 8 5 4 25 25 H 1.09001 * 109.46832 * 295.00079 * 8 5 4 26 26 H 0.97002 * 119.99739 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8112 1.3887 -0.0014 6 1 4.5794 2.4201 0.2648 7 7 5.7535 0.8305 0.9776 8 6 5.4414 1.3510 -1.3950 9 6 6.6396 2.2643 -1.4294 10 1 6.9235 2.8161 -0.5456 11 6 7.3740 2.3945 -2.5890 12 7 8.4200 3.1912 -2.6189 13 14 6.8833 1.4395 -4.1176 14 1 5.9332 2.2483 -4.9228 15 1 8.0930 1.1458 -4.9273 16 1 6.2337 0.1653 -3.7179 17 7 3.4646 -0.7241 -0.0063 18 8 2.3029 -1.0735 -0.0006 19 1 -0.3632 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5138 22 1 5.9843 -0.1257 0.7526 23 1 6.5856 1.3976 1.0426 24 1 4.7109 1.6820 -2.1332 25 1 5.7541 0.3324 -1.6248 26 1 8.9365 3.2831 -3.4348 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259977548.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:45 Heat of formation + Delta-G solvation = 57.110546 kcal Electronic energy + Delta-G solvation = -12250.196687 eV Core-core repulsion = 9945.950353 eV Total energy + Delta-G solvation = -2304.246335 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.23562 -36.61481 -34.89410 -32.96986 -32.12824 -28.76254 -28.63599 -25.58780 -23.25382 -21.93332 -19.74811 -17.83242 -17.58381 -16.70205 -15.08940 -14.80429 -14.37219 -13.64557 -13.49605 -13.30660 -13.05708 -12.44245 -12.17707 -11.92438 -11.40766 -11.14362 -10.76739 -10.67107 -10.35240 -9.91876 -9.53000 -9.38083 -8.67671 -8.04652 -6.17690 -4.18436 1.46732 2.63668 3.08317 3.23166 3.30856 3.35282 3.92563 4.34503 4.51453 5.09294 5.15005 5.17252 5.20544 5.53097 5.65148 6.01366 6.10795 6.29338 6.41500 6.91000 7.09852 7.57658 7.73669 8.09544 8.34147 8.56251 8.83005 9.43561 10.94564 Molecular weight = 197.09amu Principal moments of inertia in cm(-1) A = 0.050831 B = 0.009463 C = 0.008726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.712972 B = 2958.184167 C = 3207.922724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.158 3.842 3 N -0.479 5.479 4 C 0.200 3.800 5 C 0.188 3.812 6 H 0.104 0.896 7 N -0.836 5.836 8 C -0.035 4.035 9 C -0.527 4.527 10 H 0.078 0.922 11 C 0.074 3.926 12 N -0.895 5.895 13 Si 0.878 3.122 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.268 1.268 17 N -0.382 5.382 18 O 0.067 5.933 19 H 0.097 0.903 20 H 0.093 0.907 21 H 0.101 0.899 22 H 0.337 0.663 23 H 0.360 0.640 24 H 0.017 0.983 25 H 0.021 0.979 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.981 -6.847 3.750 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.063 4.063 3 N -0.213 5.213 4 C -0.074 4.074 5 C 0.074 3.926 6 H 0.122 0.878 7 N -0.367 5.367 8 C -0.075 4.075 9 C -0.565 4.565 10 H 0.096 0.904 11 C -0.128 4.128 12 N -0.532 5.532 13 Si 0.705 3.295 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.193 1.193 17 N -0.091 5.091 18 O 0.010 5.990 19 H 0.115 0.885 20 H 0.112 0.888 21 H 0.120 0.880 22 H 0.148 0.852 23 H 0.176 0.824 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.608 -6.731 4.178 15.747 hybrid contribution 0.335 -0.549 -1.815 1.926 sum -13.274 -7.280 2.363 15.322 Atomic orbital electron populations 1.20285 0.80709 1.05415 1.05023 1.28774 0.98807 0.81333 0.97433 1.71856 1.00576 1.28919 1.19986 1.26208 0.95356 0.87974 0.97859 1.19710 0.83623 0.95269 0.93978 0.87832 1.59042 1.19982 1.07459 1.50231 1.20309 0.96953 0.98076 0.92202 1.20919 1.09868 1.26100 0.99567 0.90390 1.24945 0.94516 0.94710 0.98669 1.69894 1.17796 1.37257 1.28296 0.86806 0.78237 0.81098 0.83345 1.20108 1.21093 1.19262 1.74562 0.96584 1.16184 1.21747 1.85260 1.11766 1.35808 1.66155 0.88465 0.88830 0.88027 0.85180 0.82386 0.96458 0.96065 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.05 15 2 C 0.16 2.25 8.51 -13.05 -0.11 2.14 15 3 N -0.48 -8.76 11.55 -9.87 -0.11 -8.87 15 4 C 0.20 4.06 7.04 -156.37 -1.10 2.96 15 5 C 0.19 4.04 3.30 -68.86 -0.23 3.81 15 6 H 0.10 2.26 8.14 -51.92 -0.42 1.84 15 7 N -0.84 -16.64 9.18 -5.65 -0.05 -16.69 15 8 C -0.04 -0.87 3.67 -27.88 -0.10 -0.97 15 9 C -0.53 -14.58 9.10 -34.44 -0.31 -14.90 15 10 H 0.08 2.26 7.39 -52.49 -0.39 1.87 15 11 C 0.07 2.13 5.47 -17.82 -0.10 2.04 15 12 N -0.89 -27.00 13.96 55.43 0.77 -26.23 15 13 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 15 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 15 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 16 H -0.27 -6.62 6.54 56.52 0.37 -6.25 15 17 N -0.38 -7.45 12.03 30.90 0.37 -7.08 15 18 O 0.07 1.09 11.31 18.11 0.20 1.30 15 19 H 0.10 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.09 0.47 8.14 -51.93 -0.42 0.05 15 21 H 0.10 0.67 8.14 -51.93 -0.42 0.25 15 22 H 0.34 6.59 8.88 -39.29 -0.35 6.24 15 23 H 0.36 7.19 7.90 -39.29 -0.31 6.88 15 24 H 0.02 0.43 7.57 -51.93 -0.39 0.04 15 25 H 0.02 0.53 7.20 -51.93 -0.37 0.16 15 26 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 LS Contribution 233.68 15.07 3.52 3.52 Total: -1.00 -32.11 233.68 -4.21 -36.32 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -2.67 Total: 5.46 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.57 Total: -4.97 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.98 Total: -58.87 kcal Atomic # 8 Polarization: 1.09 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -32.11 -4.21 -36.32 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259977548.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.434 kcal (2) G-P(sol) polarization free energy of solvation -32.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds