Wall clock time and date at job start Mon Mar 30 2020 02:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28785 * 125.44471 * 2 1 4 4 N 1.28997 * 108.72260 * 179.72276 * 3 2 1 5 5 C 1.33315 * 107.35360 * 0.43323 * 4 3 2 6 6 C 1.50699 * 126.54634 * 179.83526 * 5 4 3 7 7 H 1.09010 * 109.46903 * 179.68905 * 6 5 4 8 8 C 1.50706 * 109.47395 * 299.68499 * 6 5 4 9 9 H 1.08000 * 119.99646 * 5.45213 * 8 6 5 10 10 C 1.37872 * 120.00249 * 185.45098 * 8 6 5 11 11 N 1.31520 * 120.00051 * 9.40857 * 10 8 6 12 12 Si 1.86800 * 120.00102 * 189.40807 * 10 8 6 13 13 H 1.48499 * 109.47038 * 84.99434 * 12 10 8 14 14 H 1.48495 * 109.47207 * 204.99030 * 12 10 8 15 15 H 1.48496 * 109.46844 * 324.99464 * 12 10 8 16 16 C 1.52999 * 109.47499 * 59.68838 * 6 5 4 17 17 N 1.46902 * 109.47147 * 63.60572 * 16 6 5 18 18 N 1.28875 * 125.45280 * 179.97438 * 2 1 3 19 19 H 1.08997 * 109.47523 * 270.00028 * 1 2 3 20 20 H 1.09003 * 109.47321 * 29.99970 * 1 2 3 21 21 H 1.09002 * 109.47073 * 150.00141 * 1 2 3 22 22 H 0.96998 * 120.00116 * 180.02562 * 11 10 8 23 23 H 1.09000 * 109.47461 * 183.60454 * 16 6 5 24 24 H 1.08997 * 109.46733 * 303.60477 * 16 6 5 25 25 H 1.00898 * 110.99894 * 180.02562 * 17 16 6 26 26 H 1.00902 * 110.99996 * 303.95917 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2118 1.0492 0.0000 4 7 3.4473 0.6780 0.0059 5 6 3.4620 -0.6550 0.0001 6 6 4.6825 -1.5390 0.0002 7 1 4.3739 -2.5845 0.0001 8 6 5.5061 -1.2584 -1.2303 9 1 5.2265 -0.4549 -1.8956 10 6 6.6167 -2.0273 -1.5067 11 7 6.8539 -3.1153 -0.8070 12 14 7.7844 -1.5238 -2.8751 13 1 8.7692 -0.5442 -2.3499 14 1 8.5001 -2.7224 -3.3811 15 1 7.0120 -0.9043 -3.9818 16 6 5.5186 -1.2540 1.2494 17 7 4.7460 -1.6094 2.4473 18 7 2.2125 -1.0498 0.0005 19 1 -0.3634 0.0000 1.0276 20 1 -0.3634 0.8900 -0.5138 21 1 -0.3633 -0.8900 -0.5138 22 1 7.6354 -3.6561 -1.0012 23 1 6.4329 -1.8467 1.2177 24 1 5.7732 -0.1947 1.2823 25 1 5.2769 -1.4299 3.2863 26 1 3.8635 -1.1207 2.4665 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260148994.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:47 Heat of formation + Delta-G solvation = 123.432061 kcal Electronic energy + Delta-G solvation = -12486.427298 eV Core-core repulsion = 10217.349631 eV Total energy + Delta-G solvation = -2269.077667 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 197.097 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.51014 -35.75893 -34.05929 -32.30401 -32.16638 -29.20701 -27.40443 -24.07864 -23.01532 -22.06853 -19.99870 -17.08064 -16.76587 -16.10951 -15.10649 -14.50210 -13.98283 -13.46686 -13.25364 -13.22392 -12.70884 -12.02466 -11.47767 -11.00280 -10.91642 -10.63940 -10.58780 -10.22098 -10.13302 -9.91068 -9.59306 -8.86434 -8.47702 -7.72842 -6.09885 -4.13529 1.91805 2.56626 3.14680 3.32262 3.38068 3.43042 4.40268 4.60577 4.99427 5.15889 5.19571 5.26276 5.58822 5.64137 6.49901 6.54869 6.71932 6.74318 6.95784 7.44039 7.64182 7.83040 8.02240 8.21682 8.28813 8.88422 9.20804 9.49482 10.98519 Molecular weight = 197.10amu Principal moments of inertia in cm(-1) A = 0.043234 B = 0.011318 C = 0.009923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.476518 B = 2473.369659 C = 2820.926295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.163 5.163 3 N -0.091 5.091 4 N -0.284 5.284 5 C 0.218 3.782 6 C 0.138 3.862 7 H 0.070 0.930 8 C -0.514 4.514 9 H 0.061 0.939 10 C 0.068 3.932 11 N -0.880 5.880 12 Si 0.898 3.102 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.076 3.924 17 N -0.850 5.850 18 N -0.326 5.326 19 H 0.091 0.909 20 H 0.102 0.898 21 H 0.103 0.897 22 H 0.265 0.735 23 H 0.097 0.903 24 H 0.014 0.986 25 H 0.324 0.676 26 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 4.131 2.741 10.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.075 5.075 3 N -0.085 5.085 4 N -0.156 5.156 5 C -0.064 4.064 6 C 0.116 3.884 7 H 0.088 0.912 8 C -0.554 4.554 9 H 0.079 0.921 10 C -0.135 4.135 11 N -0.517 5.517 12 Si 0.725 3.275 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.055 4.055 17 N -0.377 5.377 18 N -0.175 5.175 19 H 0.110 0.890 20 H 0.121 0.879 21 H 0.122 0.878 22 H 0.074 0.926 23 H 0.115 0.885 24 H 0.032 0.968 25 H 0.135 0.865 26 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.440 3.786 2.452 10.463 hybrid contribution 0.813 0.856 -0.515 1.288 sum -8.628 4.642 1.937 9.987 Atomic orbital electron populations 1.22142 0.70813 1.05891 1.04972 1.49939 1.09969 1.01690 1.45874 1.78828 0.97463 1.15028 1.17224 1.75811 1.08414 1.12720 1.18605 1.26770 0.93441 0.90138 0.96016 1.17449 0.83351 0.93107 0.94458 0.91183 1.20853 1.10519 1.16736 1.07291 0.92090 1.24925 0.97772 0.94165 0.96629 1.69986 1.27678 1.13236 1.40829 0.86510 0.80995 0.78059 0.81935 1.20278 1.21164 1.19930 1.21997 0.98244 0.97339 0.87953 1.58970 1.07600 1.65972 1.05200 1.74824 1.04123 1.14448 1.24147 0.89005 0.87926 0.87828 0.92562 0.88524 0.96785 0.86511 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.03 11.63 59.85 0.70 1.73 15 2 N -0.16 -2.89 4.40 -16.69 -0.07 -2.97 15 3 N -0.09 -1.84 13.25 60.35 0.80 -1.04 15 4 N -0.28 -6.63 12.50 32.44 0.41 -6.23 15 5 C 0.22 5.20 5.79 -156.63 -0.91 4.29 15 6 C 0.14 3.60 2.33 -92.92 -0.22 3.38 15 7 H 0.07 2.00 8.09 -51.92 -0.42 1.58 15 8 C -0.51 -14.37 8.47 -34.44 -0.29 -14.67 15 9 H 0.06 1.75 7.76 -52.49 -0.41 1.34 15 10 C 0.07 1.88 5.17 -17.82 -0.09 1.79 15 11 N -0.88 -24.80 12.15 55.43 0.67 -24.13 15 12 Si 0.90 21.29 29.55 -169.99 -5.02 16.27 15 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 14 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 16 C 0.08 1.82 6.13 -3.82 -0.02 1.80 15 17 N -0.85 -17.62 9.62 -10.37 -0.10 -17.71 15 18 N -0.33 -6.98 12.13 32.46 0.39 -6.58 15 19 H 0.09 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.10 0.78 8.14 -51.93 -0.42 0.35 15 21 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 22 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 23 H 0.10 2.52 6.82 -51.93 -0.35 2.16 15 24 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 15 25 H 0.32 5.77 9.08 -39.29 -0.36 5.41 15 26 H 0.32 6.46 8.01 -39.29 -0.31 6.15 15 LS Contribution 235.08 15.07 3.54 3.54 Total: -1.00 -31.73 235.08 -2.89 -34.62 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -2.68 Total: 5.91 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -0.83 Total: -1.68 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: 2.10 Total: -58.66 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.73 -2.89 -34.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148994.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.053 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds