Wall clock time and date at job start Mon Mar 30 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86801 * 119.99653 * 2 1 4 4 H 1.48495 * 109.47593 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47096 * 120.00204 * 3 2 1 6 6 H 1.48502 * 109.47221 * 239.99782 * 3 2 1 7 7 C 1.38626 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00256 * 179.97438 * 7 2 1 9 9 O 1.34930 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.42901 * 117.00055 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.27555 * 27.91018 * 10 9 7 12 12 C 1.54596 * 110.30931 * 265.71656 * 10 9 7 13 13 C 1.54944 * 102.92035 * 219.12680 * 12 10 9 14 14 N 1.48527 * 103.22837 * 37.41486 * 13 12 10 15 15 C 1.46900 * 111.00333 * 200.28207 * 14 13 12 16 16 C 1.52994 * 117.49694 * 254.23067 * 15 14 13 17 17 C 1.52994 * 117.50270 * 185.60541 * 15 14 13 18 18 C 1.47908 * 105.82050 * 320.79343 * 14 13 12 19 19 H 0.97009 * 120.00665 * 0.02562 * 1 2 3 20 20 H 1.09000 * 110.72498 * 337.48001 * 12 10 9 21 21 H 1.09000 * 110.72755 * 100.76682 * 12 10 9 22 22 H 1.08995 * 110.66522 * 278.97917 * 13 12 10 23 23 H 1.09000 * 110.80830 * 155.91648 * 13 12 10 24 24 H 1.08999 * 115.54595 * 39.93145 * 15 14 13 25 25 H 1.09003 * 117.50360 * 359.97438 * 16 15 14 26 26 H 1.09004 * 117.50210 * 145.01455 * 16 15 14 27 27 H 1.09001 * 117.50158 * 214.97503 * 17 15 14 28 28 H 1.08997 * 117.49734 * 359.97438 * 17 15 14 29 29 H 1.09004 * 109.91458 * 265.98194 * 18 14 13 30 30 H 1.08994 * 110.08340 * 144.77563 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 1.2848 2.7465 -0.0006 5 1 3.1035 1.6965 1.2125 6 1 3.1035 1.6965 -1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3343 -2.3690 0.0005 10 6 2.1127 -3.5675 0.0005 11 1 3.0761 -3.3922 0.4791 12 6 2.3141 -4.0765 -1.4453 13 6 2.1861 -5.6131 -1.2926 14 7 1.1176 -5.7654 -0.2722 15 6 1.1750 -7.0920 0.3562 16 6 0.1063 -8.1106 -0.0452 17 6 0.0597 -7.4576 1.3377 18 6 1.3548 -4.6970 0.7227 19 1 -0.4851 0.8401 -0.0004 20 1 1.5363 -3.6882 -2.1028 21 1 3.3033 -3.8067 -1.8149 22 1 3.1221 -6.0435 -0.9367 23 1 1.8866 -6.0722 -2.2347 24 1 2.1755 -7.4688 0.5682 25 1 -0.6396 -7.7964 -0.7753 26 1 0.4037 -9.1580 -0.0975 27 1 0.3264 -8.0754 2.1952 28 1 -0.7164 -6.7137 1.5174 29 1 1.9580 -5.0824 1.5447 30 1 0.4047 -4.3223 1.1033 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260156257.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:34 Heat of formation + Delta-G solvation = -0.440281 kcal Electronic energy + Delta-G solvation = -12530.231679 eV Core-core repulsion = 10327.030096 eV Total energy + Delta-G solvation = -2203.201582 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.85226 -36.51457 -34.60827 -31.57883 -29.05541 -27.84256 -24.33765 -22.24437 -21.94263 -20.38407 -19.60299 -17.66972 -16.38989 -15.44251 -15.02589 -14.29191 -13.80318 -13.55629 -12.69497 -12.49369 -12.31418 -11.98870 -11.47874 -11.38307 -11.15454 -10.96866 -10.81782 -10.35224 -10.24864 -10.12054 -9.80449 -9.47740 -9.08346 -8.07595 -7.93181 -5.91491 -3.55418 3.33234 3.35000 3.38386 3.88788 4.15646 4.33927 5.03827 5.05826 5.19802 5.27792 5.39540 5.51147 5.60898 5.69306 5.73597 5.78813 5.90113 6.10225 6.17477 6.30328 6.38908 6.43825 6.68411 6.79324 6.92072 7.29741 7.45766 7.49720 8.46136 9.51333 10.20653 11.29193 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.072798 B = 0.007706 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.535278 B = 3632.487059 C = 3815.365083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.023 3.977 3 Si 0.924 3.076 4 H -0.283 1.283 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.362 4.362 8 H 0.061 0.939 9 O -0.278 6.278 10 C 0.090 3.910 11 H 0.044 0.956 12 C -0.144 4.144 13 C 0.042 3.958 14 N -0.487 5.487 15 C -0.004 4.004 16 C -0.165 4.165 17 C -0.172 4.172 18 C 0.044 3.956 19 H 0.258 0.742 20 H 0.083 0.917 21 H 0.063 0.937 22 H 0.037 0.963 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.041 0.959 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 -12.342 0.267 12.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.175 4.175 3 Si 0.751 3.249 4 H -0.209 1.209 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.442 4.442 8 H 0.079 0.921 9 O -0.192 6.192 10 C 0.030 3.970 11 H 0.062 0.938 12 C -0.182 4.182 13 C -0.086 4.086 14 N -0.212 5.212 15 C -0.114 4.114 16 C -0.202 4.202 17 C -0.209 4.209 18 C -0.083 4.083 19 H 0.068 0.932 20 H 0.102 0.898 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.094 0.906 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.894 -12.169 0.047 12.508 hybrid contribution 1.580 0.680 0.366 1.759 sum 4.474 -11.489 0.413 12.336 Atomic orbital electron populations 1.70015 1.05368 1.25976 1.51692 1.24937 0.95634 0.97672 0.99256 0.86068 0.78551 0.81936 0.78344 1.20871 1.20440 1.20425 1.20829 0.90041 0.82853 1.50450 0.92116 1.85742 1.31084 1.10019 1.92387 1.22554 0.93466 0.88035 0.92990 0.93780 1.23086 1.01796 0.93222 1.00141 1.23135 0.92245 0.97329 0.95899 1.64548 1.44789 1.00214 1.11603 1.22585 0.93658 0.92147 1.02965 1.22989 1.02082 0.96665 0.98513 1.22986 1.01512 1.03448 0.92971 1.22870 1.01541 0.90788 0.93127 0.93178 0.89806 0.91866 0.94453 0.90598 0.89971 0.88199 0.89198 0.89048 0.88093 0.94068 0.89137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.20 13.67 55.48 0.76 -27.44 16 2 C 0.02 0.69 5.49 -17.52 -0.10 0.60 16 3 Si 0.92 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.36 -10.73 9.82 30.88 0.30 -10.42 16 8 H 0.06 1.69 7.63 -52.49 -0.40 1.29 16 9 O -0.28 -8.07 9.37 -16.51 -0.15 -8.22 16 10 C 0.09 2.02 3.52 -25.37 -0.09 1.94 16 11 H 0.04 0.97 7.81 -51.93 -0.41 0.56 16 12 C -0.14 -2.82 6.80 -24.87 -0.17 -2.99 16 13 C 0.04 0.68 6.56 -1.90 -0.01 0.67 16 14 N -0.49 -8.54 5.42 -222.51 -1.21 -9.75 16 15 C 0.00 -0.06 4.87 -67.72 -0.33 -0.39 16 16 C -0.16 -2.01 10.46 -26.73 -0.28 -2.29 16 17 C -0.17 -2.19 10.19 -26.73 -0.27 -2.46 16 18 C 0.04 0.87 6.30 -2.75 -0.02 0.85 16 19 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 20 H 0.08 1.83 8.08 -51.93 -0.42 1.41 16 21 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 22 H 0.04 0.55 7.90 -51.93 -0.41 0.14 16 23 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 24 H 0.08 1.09 7.97 -51.93 -0.41 0.67 16 25 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.04 0.73 7.77 -51.93 -0.40 0.32 16 30 H 0.09 1.98 7.96 -51.93 -0.41 1.56 16 LS Contribution 255.63 15.07 3.85 3.85 Total: -1.00 -32.49 255.63 -7.27 -39.77 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.54 Total: -0.92 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.96 Total: -14.51 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.45 Total: -37.19 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: -0.15 Total: -8.22 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -32.49 -7.27 -39.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156257.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.326 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds