Wall clock time and date at job start Mon Mar 30 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31579 * 1 3 3 Si 1.86801 * 119.99653 * 2 1 4 4 H 1.48495 * 109.47593 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47096 * 120.00204 * 3 2 1 6 6 H 1.48502 * 109.47221 * 239.99782 * 3 2 1 7 7 C 1.38626 * 120.00260 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00256 * 179.97438 * 7 2 1 9 9 O 1.34930 * 119.99870 * 0.02562 * 7 2 1 10 10 C 1.42901 * 117.00055 * 179.97438 * 9 7 2 11 11 H 1.09000 * 110.27555 * 27.91018 * 10 9 7 12 12 C 1.54596 * 110.30931 * 265.71656 * 10 9 7 13 13 C 1.54944 * 102.92035 * 219.12680 * 12 10 9 14 14 N 1.48527 * 103.22837 * 37.41486 * 13 12 10 15 15 C 1.46900 * 111.00333 * 200.28207 * 14 13 12 16 16 C 1.52994 * 117.49694 * 254.23067 * 15 14 13 17 17 C 1.52994 * 117.50270 * 185.60541 * 15 14 13 18 18 C 1.47908 * 105.82050 * 320.79343 * 14 13 12 19 19 H 0.97009 * 120.00665 * 0.02562 * 1 2 3 20 20 H 1.09000 * 110.72498 * 337.48001 * 12 10 9 21 21 H 1.09000 * 110.72755 * 100.76682 * 12 10 9 22 22 H 1.08995 * 110.66522 * 278.97917 * 13 12 10 23 23 H 1.09000 * 110.80830 * 155.91648 * 13 12 10 24 24 H 1.08999 * 115.54595 * 39.93145 * 15 14 13 25 25 H 1.09003 * 117.50360 * 359.97438 * 16 15 14 26 26 H 1.09004 * 117.50210 * 145.01455 * 16 15 14 27 27 H 1.09001 * 117.50158 * 214.97503 * 17 15 14 28 28 H 1.08997 * 117.49734 * 359.97438 * 17 15 14 29 29 H 1.09004 * 109.91458 * 265.98194 * 18 14 13 30 30 H 1.08994 * 110.08340 * 144.77563 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 1.2848 2.7465 -0.0006 5 1 3.1035 1.6965 1.2125 6 1 3.1035 1.6965 -1.2125 7 6 2.0090 -1.2005 0.0005 8 1 3.0889 -1.2005 0.0001 9 8 1.3343 -2.3690 0.0005 10 6 2.1127 -3.5675 0.0005 11 1 3.0761 -3.3922 0.4791 12 6 2.3141 -4.0765 -1.4453 13 6 2.1861 -5.6131 -1.2926 14 7 1.1176 -5.7654 -0.2722 15 6 1.1750 -7.0920 0.3562 16 6 0.1063 -8.1106 -0.0452 17 6 0.0597 -7.4576 1.3377 18 6 1.3548 -4.6970 0.7227 19 1 -0.4851 0.8401 -0.0004 20 1 1.5363 -3.6882 -2.1028 21 1 3.3033 -3.8067 -1.8149 22 1 3.1221 -6.0435 -0.9367 23 1 1.8866 -6.0722 -2.2347 24 1 2.1755 -7.4688 0.5682 25 1 -0.6396 -7.7964 -0.7753 26 1 0.4037 -9.1580 -0.0975 27 1 0.3264 -8.0754 2.1952 28 1 -0.7164 -6.7137 1.5174 29 1 1.9580 -5.0824 1.5447 30 1 0.4047 -4.3223 1.1033 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260156257.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:34 Heat of formation + Delta-G solvation = -23.624992 kcal Electronic energy + Delta-G solvation = -12531.237043 eV Core-core repulsion = 10327.030096 eV Total energy + Delta-G solvation = -2204.206947 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 197.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.29512 -38.15315 -36.16822 -33.76393 -30.55283 -29.46386 -26.55828 -23.32178 -23.21793 -21.79871 -21.10035 -19.81468 -17.78510 -17.29989 -16.41938 -15.87621 -15.41765 -15.09943 -14.62152 -13.99345 -13.94181 -13.48691 -13.34667 -12.79400 -12.62848 -12.48820 -12.33892 -12.14650 -11.92309 -11.37434 -11.30664 -11.13137 -10.94448 -10.13231 -9.37921 -8.16285 -5.86014 1.39257 1.47375 1.54422 2.33192 2.78959 2.96169 3.16216 3.63972 3.76958 3.89552 4.03327 4.16254 4.26817 4.29834 4.39382 4.58646 4.76196 4.80713 4.82804 4.92689 5.00661 5.06504 5.11694 5.24534 5.28639 5.33790 5.85369 6.21122 6.22683 7.26174 8.08539 9.08529 Molecular weight = 197.12amu Principal moments of inertia in cm(-1) A = 0.072798 B = 0.007706 C = 0.007337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.535278 B = 3632.487059 C = 3815.365083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.044 4.044 3 Si 1.006 2.994 4 H -0.280 1.280 5 H -0.263 1.263 6 H -0.264 1.264 7 C -0.376 4.376 8 H 0.073 0.927 9 O -0.323 6.323 10 C 0.074 3.926 11 H 0.048 0.952 12 C -0.140 4.140 13 C 0.053 3.947 14 N -0.506 5.506 15 C -0.023 4.023 16 C -0.148 4.148 17 C -0.172 4.172 18 C 0.056 3.944 19 H 0.260 0.740 20 H 0.052 0.948 21 H 0.079 0.921 22 H 0.063 0.937 23 H 0.093 0.907 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 -13.497 0.243 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.237 4.237 3 Si 0.828 3.172 4 H -0.205 1.205 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.091 0.909 9 O -0.238 6.238 10 C 0.014 3.986 11 H 0.066 0.934 12 C -0.178 4.178 13 C -0.074 4.074 14 N -0.231 5.231 15 C -0.132 4.132 16 C -0.186 4.186 17 C -0.210 4.210 18 C -0.072 4.072 19 H 0.069 0.931 20 H 0.071 0.929 21 H 0.097 0.903 22 H 0.081 0.919 23 H 0.111 0.889 24 H 0.119 0.881 25 H 0.106 0.894 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.652 -13.364 0.020 14.151 hybrid contribution 1.027 0.916 0.375 1.427 sum 5.679 -12.448 0.395 13.688 Atomic orbital electron populations 1.70207 1.07667 1.27230 1.53512 1.26240 0.96723 1.02079 0.98664 0.84825 0.77207 0.75921 0.79291 1.20511 1.18794 1.18846 1.21356 0.90749 0.83588 1.49789 0.90940 1.85677 1.33633 1.11624 1.92899 1.22947 0.93490 0.86733 0.95394 0.93359 1.22971 1.01532 0.95865 0.97437 1.23106 0.93205 0.94576 0.96504 1.64477 1.45725 1.01352 1.11533 1.22754 0.95196 0.90856 1.04364 1.23061 1.00379 0.97640 0.97491 1.23046 1.00299 1.03353 0.94278 1.22636 0.99691 0.90853 0.94035 0.93134 0.92910 0.90275 0.91861 0.88863 0.88056 0.89415 0.86116 0.86511 0.90251 0.92014 0.92482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.63 13.67 21.61 0.30 -61.33 16 2 C -0.04 -2.67 5.49 84.82 0.47 -2.20 16 3 Si 1.01 45.81 29.55 68.60 2.03 47.84 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.38 -22.67 9.82 67.91 0.67 -22.00 16 8 H 0.07 4.03 7.63 -2.91 -0.02 4.01 16 9 O -0.32 -19.44 9.37 -81.99 -0.77 -20.20 16 10 C 0.07 3.36 3.52 31.47 0.11 3.47 16 11 H 0.05 2.11 7.81 -2.39 -0.02 2.10 16 12 C -0.14 -5.44 6.80 31.80 0.22 -5.22 16 13 C 0.05 1.63 6.56 86.65 0.57 2.20 16 14 N -0.51 -17.22 5.42 -857.87 -4.65 -21.87 16 15 C -0.02 -0.60 4.87 44.91 0.22 -0.38 16 16 C -0.15 -3.21 10.46 30.59 0.32 -2.89 16 17 C -0.17 -4.06 10.19 30.59 0.31 -3.75 16 18 C 0.06 2.20 6.30 86.45 0.54 2.75 16 19 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 20 H 0.05 2.36 8.08 -2.39 -0.02 2.34 16 21 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 22 H 0.06 1.63 7.90 -2.39 -0.02 1.61 16 23 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 24 H 0.10 2.28 7.97 -2.39 -0.02 2.26 16 25 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.12 1.90 8.14 -2.38 -0.02 1.88 16 27 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 2.14 7.77 -2.38 -0.02 2.12 16 30 H 0.06 2.62 7.96 -2.39 -0.02 2.60 16 Total: -1.00 -72.19 255.63 1.43 -70.76 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.10 Total: 12.84 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 3.42 Total: -28.03 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -4.35 Total: -83.20 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.77 Total: -20.20 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -72.19 1.43 -70.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260156257.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.132 kcal (2) G-P(sol) polarization free energy of solvation -72.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds